Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02258 ATGCATGCAATTTCTCTACTTGGAAAAAGTAACTCAAGGCTCAATCGATGGAGAATAATCCCAATCAGACAAGGGACAAGGAAAAATAAAGGATTGCATATTACATTGTCAGGGGAGGTTTGCTCAGATACACAACCTCTTATTCATATAGCTTTGGATGGATTCAATGTTTGTATATTTGCCGACGGCCAGACAGGGTCAGCAAAAACACACACCATGTCTGGACCAAACAATATTACTGAGGAAAAAGTTGGTGTCAACTACCGTATGTGCTTTGAGGAATCTTTTCTGTGGTCTGATGAACTTGGGACAAAAGAATCGAGCAGTTGA 330 0.403 MHAISLLGKSNSRLNRWRIIPIRQGTRKNKGLHITLSGEVCSDTQPLIHIALDGFNVCIFADGQTGSAKTHTMSGPNNITEEKVGVNYRMCFEESFLWSDELGTKESSS 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02258 109 Pfam Kinesin motor domain 40 91 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g02258 109 ProSiteProfiles Kinesin motor domain profile. 1 109 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g02258 109 Gene3D Kinesin motor domain 26 102 IPR036961 -
Trre12g02258 109 PANTHER KINESIN-LIKE PROTEIN KLP-3 39 101 IPR027640 GO:0003777|GO:0007018
Trre12g02258 109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 91 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02258 Trre-Chr12 25138588 25142357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02258 39 75 Calmodulin-binding Proteins AT5G65930 56.757 3.18e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02258 K10406 - gmx:100808197 90.1225