Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02252 ATGATGAAGAGGAACAATATGAGCACAAGCTTGAAAGGCTATCATCATAACCATAGTTATTACAACATCAATCCATTAATCATCACAAACAAAAGTCCTTCTGATCATAGTAATAATGGATCATCATCAGAGGATTATATGAATGGATTTCCATGGCCACCAAGATCATACACATGTAGCTTTTGTAGAAAAGAGTTCAAATCAGCTCAAGCACTTGGTGGTCACATGAATGTTCATAGGAGAGATAGAGCAAGGCTTAGACAATCATCACCACCAACTCATCAAGGTTCTTCTATGCTTAACCTTAATAACCCTACTAACCCTAACTTTTTCTCAAACTCATCTTCATCATCATCATTATCATCATCTTCCTCTTTAGCACCAACAAATCTCAAGCCTATTACTTGCACTTTACCTTTGTTTGTTGTGGATGGTATTGTGTTGAACCCTACTTTGAGCACAATGACCAAAGAGCCCATAAGAAAATCAAATATGGAACAATATGATGATTTAGCTAGTGAAGATGGATGTAGAATGATGAAGAAGGGTGAGATTCTAAGGATGGATTTAGAGATAGGTTTGCCAGGAGATTATGATGATAATAACTTGGATCTTGAGCTTCGTTTGGGTACTACTACTTACTCTAATTAA 651 0.3625 MMKRNNMSTSLKGYHHNHSYYNINPLIITNKSPSDHSNNGSSSEDYMNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPTHQGSSMLNLNNPTNPNFFSNSSSSSSLSSSSSLAPTNLKPITCTLPLFVVDGIVLNPTLSTMTKEPIRKSNMEQYDDLASEDGCRMMKKGEILRMDLEIGLPGDYDDNNLDLELRLGTTTYSN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02252 216 Gene3D Classic Zinc Finger 53 109 - -
Trre12g02252 216 MobiDBLite consensus disorder prediction 89 124 - -
Trre12g02252 216 MobiDBLite consensus disorder prediction 73 124 - -
Trre12g02252 216 Pfam C2H2-type zinc finger 57 81 - -
Trre12g02252 216 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Trre12g02252 216 PANTHER OS07G0101800 PROTEIN 40 212 - -
Trre12g02252 216 SUPERFAMILY beta-beta-alpha zinc fingers 54 83 IPR036236 -
Trre12g02252 216 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Trre12g02252 216 SMART c2h2final6 57 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02252 Trre-Chr12 25015200 25015850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02252 38 210 C2H2 Transcription Factor Family AT3G23130 36.000 3.70e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g02252 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02252 - - gmx:100781722 200.29