Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02248 ATGACAACAACAAACTTCACTCAATTCTATGACTCATGGTACTCACAATTCAACAACTTAATCCACCAACTCACAATTTCATCAACCCAAACCGAAAACTCAGAAGAACTTATCCTAAAAGTTATGTCTCACTATGAAGACTACTACAAAGCTAAATCAATGGCTGTTGAAAAAGATCCACTACACGTGTTATCATCTCCTTGGGCTACTTCACTTGAACGTTCACTTCATTGGATTGCTGGTTGGAGACCCACCACAGCTTTTCATCTCATATACACTGAATCTTCTCTTCTCTTTGAATCTCACATTGTTGATATTCTTCGTGGGTTTAACACTGGTGACCTTGGTGATCTTTCTCCCAATCAGTTTCGTCGTGTTAGTGACTTGCAATGTGATACTGTGAAAGAAGAGAATGCAATAACAGAGGAGCTATCAGAGTGGCAGGATAGTGCGAGCGATATGATGGGTTCAGACACTGATGTCAACAAGAAGATTGAACGGCTGGTAAGCATTATAAAGAAAGCGGATAATCTACGGCTGAGAACATTGCGGAGCGTGGTGGGGTTCTTGTCACCGCAGCAGGCTATTGAGTTCTTGATTGCTTCAGCTGAGTTGACAGTTGGGATACGCGGGTGGGGATTGAATCATGACCGTTCGCGTCCTAGGATTTGA 672 0.4256 MTTTNFTQFYDSWYSQFNNLIHQLTISSTQTENSEELILKVMSHYEDYYKAKSMAVEKDPLHVLSSPWATSLERSLHWIAGWRPTTAFHLIYTESSLLFESHIVDILRGFNTGDLGDLSPNQFRRVSDLQCDTVKEENAITEELSEWQDSASDMMGSDTDVNKKIERLVSIIKKADNLRLRTLRSVVGFLSPQQAIEFLIASAELTVGIRGWGLNHDRSRPRI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02248 223 ProSiteProfiles DOG1 domain profile. 3 219 IPR025422 GO:0006351|GO:0043565
Trre12g02248 223 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 5 220 - -
Trre12g02248 223 Pfam Seed dormancy control 19 93 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02248 Trre-Chr12 24955045 24961939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02248 10 211 bZIP Transcription Factor Family AT5G06960 26.126 4.97e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02248 - - gmx:778192 321.242