Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02242 ATGTCGTTGATGAAGGTATTTCGATCTCGCAAATTCTCCAAATCTTTTAAAGAGGTTCAATCTCTAGATGCTATCTCCGATGACCGGAGAGGAATCTCCGGTCGTGAATCGGCGGACGGAACTGATTGGTCCACCATGTTACCGGATCTCCTTGCGGAGATTATTAAACGAGTTGACGTCGCCGAAGAACAGTGGCCACACCGCCAAAACGTCGTCGCTTGTGCTTGCGTATGTAAACGGTGGAGAGATATCACACGTGAGATTGTTCGTTCACCTTCGCGTAACGGAAAAATCACTTTTCCTTCTTGTCTTAAACAGCCAGGACCACGCGACCTACCACATCAATGTCTTATAAAGCGGAATAAGAAGACTTCTACATTTTACCTTTATCTCGCCCTTTCATCATCATTCACAGACAAAGGGAAATTTCTATTAGCAGCTAGAAGATATAGGTGTGGTACCCATACTGAGTATGTTATATCACTTGATGCTGATGACATATCACAAGGAAGCAATGCCTATGTCGGCAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCGCCTCATAATGGTGCCAAACCTTCGAGTTGCAAAGCTAGCCGGCGTTTTGCAAGCAAACAGATAAGCCCTCAAGTTCCTGCTGGTAACTTCGAGGCAGGGAATGTTTCCTACAAGTTCAACCTTTTGAAATCAAGAGGTCCAAGGAGAATGATTTGCTCTCTGAAGTCTACTGTCTCATCATCAATGGATGAAAGTTCAGACAACAAGTCTTTTGATGTCCTTAAGACGCACTCTAAAGAACAAGCCGCTTCTGCATACACAATCTTGAAGAACAAAGCTCCAAGGTGGCACGAGCATTTACAGTGCTGGTGCTTGAACTTCCATGGTCGTGTGACAGTGGCATCCGTGAAGAACTTTCAGCTGGTTGCCACTGTGGACCAAAGCCAACCAGGTGGGAAAGGCGATGAAGAAACAGTTCTCCTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACAATGGACTATAGACAACCCTTATCCGCCTTCCAGGCATTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTAGCTTGTGAGTAA 1122 0.4501 MSLMKVFRSRKFSKSFKEVQSLDAISDDRRGISGRESADGTDWSTMLPDLLAEIIKRVDVAEEQWPHRQNVVACACVCKRWRDITREIVRSPSRNGKITFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALSSSFTDKGKFLLAARRYRCGTHTEYVISLDADDISQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSCKASRRFASKQISPQVPAGNFEAGNVSYKFNLLKSRGPRRMICSLKSTVSSSMDESSDNKSFDVLKTHSKEQAASAYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02242 373 PANTHER TUBBY-RELATED 38 371 - -
Trre12g02242 373 Pfam Tub family 104 368 IPR000007 -
Trre12g02242 373 Gene3D Tubby Protein; Chain A 99 373 IPR025659 -
Trre12g02242 373 Gene3D - 35 92 - -
Trre12g02242 373 ProSitePatterns Tub family signature 1. 301 314 IPR018066 -
Trre12g02242 373 SUPERFAMILY Tubby C-terminal domain-like 93 373 IPR025659 -
Trre12g02242 373 SUPERFAMILY F-box domain 40 86 IPR036047 GO:0005515
Trre12g02242 373 ProSitePatterns Tub family signature 2. 358 373 IPR018066 -
Trre12g02242 373 Pfam F-box domain 48 90 IPR001810 GO:0005515
Trre12g02242 373 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Trre12g02242 373 PRINTS Tubby superfamily signature 301 317 IPR000007 -
Trre12g02242 373 PRINTS Tubby superfamily signature 283 300 IPR000007 -
Trre12g02242 373 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Trre12g02242 373 PRINTS Tubby superfamily signature 330 349 IPR000007 -
Trre12g02242 373 PRINTS Tubby superfamily signature 351 373 IPR000007 -
Trre12g02242 373 PRINTS Tubby superfamily signature 223 250 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02242 Trre-Chr12 24893881 24896833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02242 1 373 TUB Transcription Factor Family AT1G53320 72.032 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre12g02242 Tub 2.6e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02242 K19600 - gmx:100808096 627.476