Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre12g02242 | ATGTCGTTGATGAAGGTATTTCGATCTCGCAAATTCTCCAAATCTTTTAAAGAGGTTCAATCTCTAGATGCTATCTCCGATGACCGGAGAGGAATCTCCGGTCGTGAATCGGCGGACGGAACTGATTGGTCCACCATGTTACCGGATCTCCTTGCGGAGATTATTAAACGAGTTGACGTCGCCGAAGAACAGTGGCCACACCGCCAAAACGTCGTCGCTTGTGCTTGCGTATGTAAACGGTGGAGAGATATCACACGTGAGATTGTTCGTTCACCTTCGCGTAACGGAAAAATCACTTTTCCTTCTTGTCTTAAACAGCCAGGACCACGCGACCTACCACATCAATGTCTTATAAAGCGGAATAAGAAGACTTCTACATTTTACCTTTATCTCGCCCTTTCATCATCATTCACAGACAAAGGGAAATTTCTATTAGCAGCTAGAAGATATAGGTGTGGTACCCATACTGAGTATGTTATATCACTTGATGCTGATGACATATCACAAGGAAGCAATGCCTATGTCGGCAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCGCCTCATAATGGTGCCAAACCTTCGAGTTGCAAAGCTAGCCGGCGTTTTGCAAGCAAACAGATAAGCCCTCAAGTTCCTGCTGGTAACTTCGAGGCAGGGAATGTTTCCTACAAGTTCAACCTTTTGAAATCAAGAGGTCCAAGGAGAATGATTTGCTCTCTGAAGTCTACTGTCTCATCATCAATGGATGAAAGTTCAGACAACAAGTCTTTTGATGTCCTTAAGACGCACTCTAAAGAACAAGCCGCTTCTGCATACACAATCTTGAAGAACAAAGCTCCAAGGTGGCACGAGCATTTACAGTGCTGGTGCTTGAACTTCCATGGTCGTGTGACAGTGGCATCCGTGAAGAACTTTCAGCTGGTTGCCACTGTGGACCAAAGCCAACCAGGTGGGAAAGGCGATGAAGAAACAGTTCTCCTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACAATGGACTATAGACAACCCTTATCCGCCTTCCAGGCATTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTAGCTTGTGAGTAA | 1122 | 0.4501 | MSLMKVFRSRKFSKSFKEVQSLDAISDDRRGISGRESADGTDWSTMLPDLLAEIIKRVDVAEEQWPHRQNVVACACVCKRWRDITREIVRSPSRNGKITFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALSSSFTDKGKFLLAARRYRCGTHTEYVISLDADDISQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSCKASRRFASKQISPQVPAGNFEAGNVSYKFNLLKSRGPRRMICSLKSTVSSSMDESSDNKSFDVLKTHSKEQAASAYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE | 373 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre12g02242 | 373 | PANTHER | TUBBY-RELATED | 38 | 371 | - | - | |
Trre12g02242 | 373 | Pfam | Tub family | 104 | 368 | IPR000007 | - | |
Trre12g02242 | 373 | Gene3D | Tubby Protein; Chain A | 99 | 373 | IPR025659 | - | |
Trre12g02242 | 373 | Gene3D | - | 35 | 92 | - | - | |
Trre12g02242 | 373 | ProSitePatterns | Tub family signature 1. | 301 | 314 | IPR018066 | - | |
Trre12g02242 | 373 | SUPERFAMILY | Tubby C-terminal domain-like | 93 | 373 | IPR025659 | - | |
Trre12g02242 | 373 | SUPERFAMILY | F-box domain | 40 | 86 | IPR036047 | GO:0005515 | |
Trre12g02242 | 373 | ProSitePatterns | Tub family signature 2. | 358 | 373 | IPR018066 | - | |
Trre12g02242 | 373 | Pfam | F-box domain | 48 | 90 | IPR001810 | GO:0005515 | |
Trre12g02242 | 373 | PRINTS | Tubby superfamily signature | 158 | 174 | IPR000007 | - | |
Trre12g02242 | 373 | PRINTS | Tubby superfamily signature | 301 | 317 | IPR000007 | - | |
Trre12g02242 | 373 | PRINTS | Tubby superfamily signature | 283 | 300 | IPR000007 | - | |
Trre12g02242 | 373 | PRINTS | Tubby superfamily signature | 174 | 198 | IPR000007 | - | |
Trre12g02242 | 373 | PRINTS | Tubby superfamily signature | 330 | 349 | IPR000007 | - | |
Trre12g02242 | 373 | PRINTS | Tubby superfamily signature | 351 | 373 | IPR000007 | - | |
Trre12g02242 | 373 | PRINTS | Tubby superfamily signature | 223 | 250 | IPR000007 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre12g02242 | Trre-Chr12 | 24893881 | 24896833 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre12g02242 | 1 | 373 | TUB Transcription Factor Family | AT1G53320 | 72.032 | 0.0 | 553 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Trre12g02242 | Tub | 2.6e-104 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre12g02242 | K19600 | - | gmx:100808096 | 627.476 |