Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02239 ATGAGAAATTCTTTTTTTCCTATTGGAAAAGAGGAGAAGGCACGTGAATACCTCCCTACAATTCTAATGCATGCTAGTGGGCATAAGCCTAATATGGAAGCAGAATCTAGCACTACAACTTCTAAGCAAAAATGTAAGCTAATCAAAAGAGATATTTTTGAAGTTGAAGAAGAAAGTGTGCCATCAACACTTTATCCTAAAGAAGAAGTCATATTTGGAGCTGCAAGTAATTTACCTCAAGCTTTCTTCTTTGAATATGATAATTTACCCCCAAACTACGGGATTTGGACATTCAGATTGGGAACTACTGTAAATGATGAAGGAAGTTTATCCTTGCCGCAAATTACTTCATGTTATGCACAAATGAGGGATCTTAGTGTGCCAATCTCCTACATTTACAAGTTTTTAAGCAAGAAAATTGATTCTGTTAGCGAAGAAGAGGTTGAAATTAAATGTATGGGAAGACCTGTACTCCCTACAACAACAACAGCTGAATTGGTTAAGTTTTGGCTGACTGTAAACGAAAAAGGAGATGGTACAGAATATGATCGCCTCATGGTCTATCTAAAATATGGTCGCAAGGTTTTAGCACCCTCTTCTTGA 603 0.3682 MRNSFFPIGKEEKAREYLPTILMHASGHKPNMEAESSTTTSKQKCKLIKRDIFEVEEESVPSTLYPKEEVIFGAASNLPQAFFFEYDNLPPNYGIWTFRLGTTVNDEGSLSLPQITSCYAQMRDLSVPISYIYKFLSKKIDSVSEEEVEIKCMGRPVLPTTTTAELVKFWLTVNEKGDGTEYDRLMVYLKYGRKVLAPSS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02239 200 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 72 195 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02239 Trre-Chr12 24874448 24876223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02239 112 171 C3H Transcription Factor Family AT3G23060 36.667 3.65e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02239 K16277 - gmx:100778462 100.138