Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02238 ATGGATGCTGGTAGAGGTCCACCTAGAAGGATTAGAATTGTAAGAAATGACCCGCATCGAGATCTGCGTTTGGACATTGATGGAATGTCTTATGAGGAACTTCTTGCATTAGGTGAGAGGATTGGCAAAGTAAACACCGGTGCATCGGATGAAATAATTACTTCTCAACTGAAAACAAAGTTATACATTCCTTATTCTCCTAGTATGATCGATTTGAATGAATTACCTCCGGATGATGAAGAAATAGACACTTGCATGATATGCCAGGATGCATACAAATATCAAGAAAATATTGGAACAATTCAATGCGGGCATGAATTTCATGTCGATTGCATTTCAAAGTGGCTGAAGTTGAAAAATCAGTGTCCGATCTGCAAATCAGAAGCTATAACTACAACAAAATAA 405 0.3778 MDAGRGPPRRIRIVRNDPHRDLRLDIDGMSYEELLALGERIGKVNTGASDEIITSQLKTKLYIPYSPSMIDLNELPPDDEEIDTCMICQDAYKYQENIGTIQCGHEFHVDCISKWLKLKNQCPICKSEAITTTK 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02238 134 SMART ring_2 85 125 IPR001841 -
Trre12g02238 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 130 IPR013083 -
Trre12g02238 134 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 16 130 IPR045191 GO:0061630
Trre12g02238 134 Pfam Ring finger domain 83 126 IPR001841 -
Trre12g02238 134 SUPERFAMILY RING/U-box 84 130 - -
Trre12g02238 134 ProSiteProfiles Zinc finger RING-type profile. 85 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02238 Trre-Chr12 24858739 24859413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02238 16 132 C3H Transcription Factor Family AT2G15530 52.137 4.31e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02238 K19041 - tpra:123896447 197.978