Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02220 ATGCTCTCAGATCGTGTTCGAATGGATGCTTACTTCAATGCCGTTTTGGAAAACAAGCATCAATTTAAGGATAAGGTTGTTTTGGATGTCGGAGCTGGTAGTGGTATTCTCGCTATATGGTCAACTCAGGCAGGTGCTAGGAAGGTTTATGCAGTGGAAGCTACTAAGATGTCAGAGGTCCAATGCCAGCCGGAATGCAGATGGTTCCAACGGTTTTACCAGATGGTCGAATTGGCTATGTCCTGTAAGATGTTACAACTCATAAAAAAAGTCCTTTACAAAATCGAAGGAAGAGGTGAGCTCCCTGCCAAAAGAAAGAATAATTTTAGAGAAGATGGAATTGGTTCCATCAATTATGTTGGATTCAAGTCTAATGAACTGTTGCAGTTGAAGCAAGGACTGCACATGGATATTTCATATGCTAAACTTAATGAATTATTAAAATCAAAGTTTCCATAA 459 0.3943 MLSDRVRMDAYFNAVLENKHQFKDKVVLDVGAGSGILAIWSTQAGARKVYAVEATKMSEVQCQPECRWFQRFYQMVELAMSCKMLQLIKKVLYKIEGRGELPAKRKNNFREDGIGSINYVGFKSNELLQLKQGLHMDISYAKLNELLKSKFP 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02220 152 Pfam Ribosomal protein L11 methyltransferase (PrmA) 16 57 - -
Trre12g02220 152 Gene3D Vaccinia Virus protein VP39 1 132 IPR029063 -
Trre12g02220 152 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 62 IPR025799 GO:0016274|GO:0018216
Trre12g02220 152 CDD AdoMet_MTases 27 63 - -
Trre12g02220 152 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 57 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02220 Trre-Chr12 24431068 24432121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02220 1 60 C2H2 Transcription Factor Family AT3G12270 50.820 7.12e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02220 K11434 - aof:109828764 108.997