Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02200 ATGAAGAAGGATCCGCGTGTTCAGTTAATATCATCTAAGAAGCCTGTTGCAACAAAAAAGTCAAGGAGCCATAATAAAAAATCTGCAATGTGTTATGGCCCGGATGAGAATTCTCATGTTGCTAACTATAAGATGGTATTGGAAAGATTTCCGCTTTCATTGGATCGGAAAAAATGGTCAAATAAGGAAAGGAAAAATCTTTCGAAGGGAATTAAGCAACAATTCCAGGAAACAGTGCTTCAAATTTCAGTTGATAGAATGAGTTCAGGTTGCTCACCTGGAGATGCAAATGACATGGATAGCATAATTGAATCAGTTAAAGATATTGAAATTACCCCAGCGAGGATTAGAGAATTTTTACCTAAAGTTAATTGGGATCGATTGGCTTCTATGTATGTTGCTGGCCGTACTGGTGGTGAATGTGAATCAAGGTGGTTGAATTGTGAAGACCCTTTGATCAACCATGGCCCATGGACTTTAGAAGAGGATAGGTCTCTTTTGATTATTGTACAAGAGAAGGGCATCCGGAACTGGTTTGATATTGCTGTATCATTGGCCACAAACAGGATTCCATTTCAATGCTTGGCACGATTCCAAAGGAGCTTAAATTCTTCGATGATAAATCGTGAATGGACTGAGGAAGAAGATGCCCAACTTTGTTCTGCTGTTGCATATTATGGTGATAGTAATTGGCAGAATGTTGCATCTGTTTTAGAACGGCGGACGGGAACCCAGTGCTCGAATAGATGGAAGAAATCAATTTGTCCTGTGAGGAAAGGGAGCTTTACTCCAGAGGAGGATGAACGCCTTACAGTAGGGGTCATGCTGTTTGGCCGGAAATGGAATCAAATAGCCAAATATGTTCCTGGCCGGATTCAATCTCAGTGTAGGGACAGATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGTGGGTGGACTGAGGAAGAGGATTTAAAATTAGAAGCTGCAATCACCAAGTATGGATATTGCTGGTCTAAAGTTGCTGAAGATGTGCCTCCCCGCACCGATTCCCAATGCCGAAAGAGATGGAAGGTGATATGTCCTGAACAAGTTCCTCTGCTTCAAGAAGCAAGAAAGCGGCAAAGGTCTCTTCTTGCCAGTAACTTTGTCGATCGAGAATCTGAACGTCCAGTCCTTACACTGAATGACTTTATTCCTTTACAAATGGTAGTTCCATCATCGAATGGTGGTGCTGAAAGTCTCCAAAGGAAGCGGAAGAGACAGACGAGGAGCGGCGTCCACAAGAAAGTGAAGTCAAAAAAACGTGCAAAAAGGACTCAACTTTGTACCGAAGAAGTACAAGATGCAGGTCTCAAGGAAGAGAGGCCTAAAAGACATACAAAGAAGGGATTGTGCTGTCCCGAGGATGTACAAGATATAGTTCCCAAGAAAGAGAAGCCTAAAAGACATTCGAAGAAGGCTCGAATTTGTCCCGAGGAAGTACAATATAAAGCAGCATATAGTGATAAGGTCAAGACTTGTGGTGGAGGTGTTCCCTTCTTTGTACTGAGCAATATTCCCAAAAAAATGAGATCTAAAAGACGTGCTAGAAAGGCTCAAATTCGTCCCCAGGAAGTAGAGAATATATCATGTAGTGACAAGGTCAGTCCCTGTATCAAGTGTTCAGAAACTCAAGATGAAGACAACATAACACTTGCATGCTTTTTGCACAACAAATCAAAGAAAAAACTATCTAAATGTACCAAAAATGCTAGCCAAGCTTCGTCTTCCTCTAAGACAAAAACTGTATTTAAGCTGGTTGAAAATCAAATCTCATGTGGTGAGCAACACAGATTGTCTCTGTCATGTGATATTGATGGAACTAAAGATTTGCCAATGCAAGCGGAGGTTGATTCTAGCAGACAAGTGAGAAAACTGGAAAGAGCAAATGCAGCTCGAAAACCTGAGGATGCACACAATTTGAACGGTGATAACCAGGATAGGCCTCTTAAGTTCTATGTGAGAAAGAAAAAGAAATTGAGCGAAGCTACTGAAGGACGTGGTGCATGCTCTCCCTCCAAATTGAAAAAGGGATCTACATTACTCCATGGAAACATGCCAGTCATCATTTCTGACGGCAGTGAACCATCCATGTCAAAAATTGTTGAAGATGAGACTGTTTTACATGGTGGTGTGGCTGGAGCCGAACCCACAACCACCAATGTGGCTGAAGCTGAACCCACAATCATCAATGTTGTTGAAGAGGAGACTGTTCTGCATGGTGGTGTCGCTGATGCTAAACCCACAAACATCGATTTGGAAGAAAACGATGACCTGCTTATTTCTTTCCTGCGAAACAAGACAAAGAAACAACCAAGACGGATCAATATTAGGAAATGA 2364 0.4175 MKKDPRVQLISSKKPVATKKSRSHNKKSAMCYGPDENSHVANYKMVLERFPLSLDRKKWSNKERKNLSKGIKQQFQETVLQISVDRMSSGCSPGDANDMDSIIESVKDIEITPARIREFLPKVNWDRLASMYVAGRTGGECESRWLNCEDPLINHGPWTLEEDRSLLIIVQEKGIRNWFDIAVSLATNRIPFQCLARFQRSLNSSMINREWTEEEDAQLCSAVAYYGDSNWQNVASVLERRTGTQCSNRWKKSICPVRKGSFTPEEDERLTVGVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLKLEAAITKYGYCWSKVAEDVPPRTDSQCRKRWKVICPEQVPLLQEARKRQRSLLASNFVDRESERPVLTLNDFIPLQMVVPSSNGGAESLQRKRKRQTRSGVHKKVKSKKRAKRTQLCTEEVQDAGLKEERPKRHTKKGLCCPEDVQDIVPKKEKPKRHSKKARICPEEVQYKAAYSDKVKTCGGGVPFFVLSNIPKKMRSKRRARKAQIRPQEVENISCSDKVSPCIKCSETQDEDNITLACFLHNKSKKKLSKCTKNASQASSSSKTKTVFKLVENQISCGEQHRLSLSCDIDGTKDLPMQAEVDSSRQVRKLERANAARKPEDAHNLNGDNQDRPLKFYVRKKKKLSEATEGRGACSPSKLKKGSTLLHGNMPVIISDGSEPSMSKIVEDETVLHGGVAGAEPTTTNVAEAEPTIINVVEEETVLHGGVADAKPTNIDLEENDDLLISFLRNKTKKQPRRINIRK 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02200 787 CDD SANT 157 202 IPR001005 -
Trre12g02200 787 MobiDBLite consensus disorder prediction 415 431 - -
Trre12g02200 787 SUPERFAMILY Homeodomain-like 256 351 IPR009057 -
Trre12g02200 787 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 150 206 IPR017930 -
Trre12g02200 787 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 304 IPR017930 -
Trre12g02200 787 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 2 686 - -
Trre12g02200 787 MobiDBLite consensus disorder prediction 1 33 - -
Trre12g02200 787 CDD SANT 210 252 IPR001005 -
Trre12g02200 787 Gene3D - 312 358 - -
Trre12g02200 787 Gene3D - 256 310 - -
Trre12g02200 787 Pfam Myb-like DNA-binding domain 210 252 IPR001005 -
Trre12g02200 787 Pfam Myb-like DNA-binding domain 156 200 IPR001005 -
Trre12g02200 787 SUPERFAMILY Homeodomain-like 186 254 IPR009057 -
Trre12g02200 787 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 258 IPR017930 -
Trre12g02200 787 CDD SANT 313 352 IPR001005 -
Trre12g02200 787 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 305 359 IPR017930 -
Trre12g02200 787 Pfam Myb-like DNA-binding domain 262 321 - -
Trre12g02200 787 SUPERFAMILY Homeodomain-like 131 183 IPR009057 -
Trre12g02200 787 ProSiteProfiles Myb-like domain profile. 305 355 IPR001005 -
Trre12g02200 787 ProSiteProfiles Myb-like domain profile. 150 202 IPR001005 -
Trre12g02200 787 Gene3D - 152 201 - -
Trre12g02200 787 Gene3D - 202 253 - -
Trre12g02200 787 SMART sant 207 256 IPR001005 -
Trre12g02200 787 SMART sant 55 151 IPR001005 -
Trre12g02200 787 SMART sant 154 204 IPR001005 -
Trre12g02200 787 SMART sant 309 357 IPR001005 -
Trre12g02200 787 SMART sant 258 306 IPR001005 -
Trre12g02200 787 MobiDBLite consensus disorder prediction 402 434 - -
Trre12g02200 787 ProSiteProfiles Myb-like domain profile. 258 304 IPR001005 -
Trre12g02200 787 ProSiteProfiles Myb-like domain profile. 203 254 IPR001005 -
Trre12g02200 787 CDD SANT 261 304 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02200 Trre-Chr12 23786760 23794055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02200 2 488 MYB-Related Transcription Factor Family AT3G18100 45.793 2.80e-145 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g02200 Myb_DNA-bind_6 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02200 K09422 - gmx:100818474 798.119