Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02199 ATGACACCACGAACCGATGAATACGAGCAAGATAACACTGAAAACGATGACGACGACGACGACGGTCTCAAAGAAGACATGGCTGCACTCGCGCGAGCTTGTATGTTCAACGACGATGAAATTCAATCTCAAGAAGATCCACTTTTAGCCACCGGAGACGCTATTGTCCCTTTCACTGTTACCGCCGACTCTGATTCCGATGAACAGAGTGACCTAGAATGTCTCAAGAGAGTTCAGAGTCTTTATCACCCTAATAACGGCACTCTTCCTCCTCCGCAACCGACTACAGCTGCATTCGACGATGACGAAGATGACTTCGAAACTGTTCGCGCCATTTTCAAACGGTTTTCTGCTTATGATGGAGGTGGAAGGGAAGCATGGGATGAGGGGAATCAGGCCCGGTGTTTAATCGGTGAGCAATATGTTGCCAAGAGCTCCATCTCTAACAGCTCAGATGCCGATGAATTGTGTCCTGATTCTCCATTACCTGTTAATGACGCCAAGTTGTTGATTAAACCATGTGGTTTTGACGAGAGTTGTGAAAATGATGCCCACTTGTCTTCTCAATTACCGAAGAAAAGATCAAGCTTTCCTCCGTCAGCTCAAGCTCTTATTGATGCTGTCAAGAAGAATAGAGCTCTCCAGAAATTTCTTAGAAGTAAGTTGATTGAAATTGAAGCAAAAATTGAGCAAAACAAAAAGCTAAGGGACAAAGTTAAACTCCTTAAGGATTTCCAGGTTTCATGCAGTAAAAGAACGGCGAGTGCTTTATCAATGAAGAAGGATCCGCGTGTTCAGTTAATATCATCTAAGAAGCCTGTTGCAACAAAAAAGTCAAGGAGCCATAATAAAAAATCTGCAATGTGTTATGGCCCGGATGAGAATTCTCATGTTGCTAACTATAAGATGGTATTGGAAAGATTTCCGCTTTCATTGGATCGGAAAAAATGGTCAAATAAGGAAAGGAAAAATCTTTCGAAGGGAATTAAGCAACAATTCCAGGAAACAGTGCTTCAAATTTCAGTTGATAGAATGAGTTCAGGTTGCTCACCTGGAGATGCAAATGACATGGATAGCATAATTGAATCAGTTAAAGATATTGAAATTACCCCAGCGAGGATTAGAGAATTTTTACCTAAAGTTAATTGGGATCGATTGGCTTCTATGTATGTTGCTGGCCGTACTGGTGGTGAATGTGAATCAAGGTGGTTGAATTGTGAAGACCCTTTGATCAACCATGGCCCATGGACTTTAGAAGAGGATAGGTCTCTTTTGATTATTGTACAAGAGAAGGGCATCCGGAACTGGTTTGATATTGCTGTATCATTGGCCACAAACAGGATTCCATTTCAATGCTTGGCACGATTCCAAAGGAGCTTAAATTCTTCGATGATAAATCGTGAATGGACTGAGGAAGAAGATGCCCAACTTTGTTCTGCTGTTGCATATTATGGTGATAGTAATTGGCAGAATGTTGCATCTGTTTTAGAACGGCGGACGGGAACCCAGTGCTCGAATAGATGGAAGAAATCAATTTGTCCTGTGAGGAAAGGGAGCTTTACTCCAGAGGAGGATGAACGCCTTACAGTAGGGGTCATGCTGTTTGGCCGGAAATGGAATCAAATAGCCAAATATGTTCCTGGCCGGATTCAATCTCAGTGTAGGGACAGATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGTGGGTGGACTGAGGAAGAGGATTTAAAATTAGAAGCTGCAATCACCAAGTATGGATATTGCTGGTCTAAAGTTGCTGAAGATGTGCCTCCCCGCACCGATTCCCAATGCCGAAAGAGATGGAAGGTGATATGTCCTGAACAAGTTCCTCTGCTTCAAGAAGCAAGAAAGCGGCAAAGGTCTCTTCTTGCCAGTAACTTTGTCGATCGAGAATCTGAACGTCCAGTCCTTACACTGAATGACTTTATTCCTTTACAAATGGTAGTTCCATCATCGAATGGTGGTGCTGAAAGTCTCCAAAGGAAGCGGAAGAGACAGACGAGGAGCGGCGTCCACAAGAAAGTGAAGTCAAAAAAACGTGCAAAAAGGACTCAACTTTGTACCGAAGAAGTACAAGATGCAGGTCTCAAGGAAGAGAGGCCTAAAAGACATACAAAGAAGGGATTGTGCTGTCCCGAGGATGTACAAGATATAGTTCCCAAGAAAGAGAAGCCTAAAAGACATTCGAAGAAGGCTCGAATTTGTCCCGAGGAAGTACAATATAAAGCAGCATATAGTGATAAGGTCAAGACTTGTGGTGGAGGTGTTCCCTTCTTTGTACTGAGCAATATTCCCAAAAAAATGAGATCTAAAAGACGTGCTAGAAAGGCTCAAATTCGTCCCCAGGAAGTAGAGAATATATCATGTAGTGACAAGGTCAGTCCCTGTATCAAGTGTTCAGAAACTCAAGATGAAGACAACATAACACTTGCATGCTTTTTGCACAACAAATCAAAGAAAAAACTATCTAAATGTACCAAAAATGCTAGCCAAGCTTCGTCTTCCTCTAAGACAAAAACTGTATTTAAGCTGGTTGAAAATCAAATCTCATGTGGTGAGCAACACAGATTGTCTCTGTCATGTGATATTGATGGAACTAAAGATTTGCCAATGCAAGCGGAGGTTGATTCTAGCAGACAAGTGAGAAAACTGGAAAGAGCAAATGCAGCTCGAAAACCTGAGGATGCACACAATTTGAACGGTGATAACCAGGATAGGCCTCTTAAGTTCTATGTGAGAAAGAAAAAGAAATTGAGCGAAGCTACTGAAGGACGTGGTGCATGCTCTCCCTCCAAATTGAAAAAGGGATCTACATTACTCCATGGAAACATGCCAGTCATCATTTCTGACGGCAGTGAACCATCCATGTCAAAAATTGTTGAAGATGAGACTGTTTTACATGGTGGTGTGGCTGGAGCCGAACCCACAACCACCAATGTGGCTGAAGCTGAACCCACAATCATCAATGTTGTTGAAGAGGAGACTGTTCTGCATGGTGGTGTCGCTGATGCTAAACCCACAAACATCGATTTGGAAGAAAACGATGACCTGCTTATTTCTTTCCTGCGAAACAAGACAAAGAAACAACCAAGACGGATCAATATTAGGAAATGA 3138 0.4238 MTPRTDEYEQDNTENDDDDDDGLKEDMAALARACMFNDDEIQSQEDPLLATGDAIVPFTVTADSDSDEQSDLECLKRVQSLYHPNNGTLPPPQPTTAAFDDDEDDFETVRAIFKRFSAYDGGGREAWDEGNQARCLIGEQYVAKSSISNSSDADELCPDSPLPVNDAKLLIKPCGFDESCENDAHLSSQLPKKRSSFPPSAQALIDAVKKNRALQKFLRSKLIEIEAKIEQNKKLRDKVKLLKDFQVSCSKRTASALSMKKDPRVQLISSKKPVATKKSRSHNKKSAMCYGPDENSHVANYKMVLERFPLSLDRKKWSNKERKNLSKGIKQQFQETVLQISVDRMSSGCSPGDANDMDSIIESVKDIEITPARIREFLPKVNWDRLASMYVAGRTGGECESRWLNCEDPLINHGPWTLEEDRSLLIIVQEKGIRNWFDIAVSLATNRIPFQCLARFQRSLNSSMINREWTEEEDAQLCSAVAYYGDSNWQNVASVLERRTGTQCSNRWKKSICPVRKGSFTPEEDERLTVGVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLKLEAAITKYGYCWSKVAEDVPPRTDSQCRKRWKVICPEQVPLLQEARKRQRSLLASNFVDRESERPVLTLNDFIPLQMVVPSSNGGAESLQRKRKRQTRSGVHKKVKSKKRAKRTQLCTEEVQDAGLKEERPKRHTKKGLCCPEDVQDIVPKKEKPKRHSKKARICPEEVQYKAAYSDKVKTCGGGVPFFVLSNIPKKMRSKRRARKAQIRPQEVENISCSDKVSPCIKCSETQDEDNITLACFLHNKSKKKLSKCTKNASQASSSSKTKTVFKLVENQISCGEQHRLSLSCDIDGTKDLPMQAEVDSSRQVRKLERANAARKPEDAHNLNGDNQDRPLKFYVRKKKKLSEATEGRGACSPSKLKKGSTLLHGNMPVIISDGSEPSMSKIVEDETVLHGGVAGAEPTTTNVAEAEPTIINVVEEETVLHGGVADAKPTNIDLEENDDLLISFLRNKTKKQPRRINIRK 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02199 1045 Pfam Myb-like DNA-binding domain 520 579 - -
Trre12g02199 1045 Coils Coil 218 238 - -
Trre12g02199 1045 MobiDBLite consensus disorder prediction 673 689 - -
Trre12g02199 1045 ProSiteProfiles Myb-like domain profile. 408 460 IPR001005 -
Trre12g02199 1045 SMART sant 465 514 IPR001005 -
Trre12g02199 1045 SMART sant 313 409 IPR001005 -
Trre12g02199 1045 SMART sant 412 462 IPR001005 -
Trre12g02199 1045 SMART sant 567 615 IPR001005 -
Trre12g02199 1045 SMART sant 516 564 IPR001005 -
Trre12g02199 1045 MobiDBLite consensus disorder prediction 1 24 - -
Trre12g02199 1045 MobiDBLite consensus disorder prediction 660 692 - -
Trre12g02199 1045 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 469 516 IPR017930 -
Trre12g02199 1045 SUPERFAMILY Homeodomain-like 514 609 IPR009057 -
Trre12g02199 1045 Gene3D - 514 568 - -
Trre12g02199 1045 MobiDBLite consensus disorder prediction 272 291 - -
Trre12g02199 1045 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 563 617 IPR017930 -
Trre12g02199 1045 SUPERFAMILY Homeodomain-like 389 441 IPR009057 -
Trre12g02199 1045 ProSiteProfiles Myb-like domain profile. 563 613 IPR001005 -
Trre12g02199 1045 CDD SANT 519 562 IPR001005 -
Trre12g02199 1045 Pfam Myb-like DNA-binding domain 414 458 IPR001005 -
Trre12g02199 1045 Pfam Myb-like DNA-binding domain 468 510 IPR001005 -
Trre12g02199 1045 MobiDBLite consensus disorder prediction 10 24 - -
Trre12g02199 1045 Gene3D - 570 616 - -
Trre12g02199 1045 SUPERFAMILY Homeodomain-like 444 512 IPR009057 -
Trre12g02199 1045 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 14 944 - -
Trre12g02199 1045 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 408 464 IPR017930 -
Trre12g02199 1045 CDD SANT 468 510 IPR001005 -
Trre12g02199 1045 Gene3D - 410 459 - -
Trre12g02199 1045 Gene3D - 460 511 - -
Trre12g02199 1045 CDD SANT 571 610 IPR001005 -
Trre12g02199 1045 ProSiteProfiles Myb-like domain profile. 516 562 IPR001005 -
Trre12g02199 1045 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 517 562 IPR017930 -
Trre12g02199 1045 CDD SANT 415 460 IPR001005 -
Trre12g02199 1045 ProSiteProfiles Myb-like domain profile. 461 512 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02199 Trre-Chr12 23785601 23794055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02199 189 746 MYB-Related Transcription Factor Family AT3G18100 46.735 3.09e-172 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g02199 Myb_DNA-bind_6 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02199 K09422 - gmx:100818474 1008.05