Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02198 ATGACAGAATTAGATCCCTCTAAGAAAGTAGCTGATAGGTATCTCAAACGTGAGGTCCTAGGTGAAGGTACCTATGGTGTTGTTTACAAAGCCATTGATACTCAGACAGGACAGACCGTTGCTATTAAGAAGATTCGGATTGGCAAGCAGAAAGAAGGGGTGAATTTTACAGCTCTTAGAGAAATTAAATTGCTTAAAGAACTCAAAGATCCAAATATAATTGAGTTGATTGATTGCTTCCCGCATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATAAGAGATCGAAATATTTTTCTTTCACCTGGTGACATTAAATCTTACCTTCAAATGACGCTAAAAGGTCTTGCTCATTGTCACAAAAAATGGGTATTGCATAGGGATATGAAACCAAATAATTTGTTGATAGGACCCAACGGACAGTTGAAACTTGCCGATTTTGGTTTAGCACGTATATTTGGAAGCCCAGATCGCAGATTCACTCATCAGGTATTTGCACGGTGGTATAGAGCACCTGAGCTATTATTTGGCACTAAGCAGTATGGCCCAGGGGTAGATGTTTGGGCTGCAGCCTGTATATTTGCTGAGCTTCTTCTTCGTCGACCCTTTTTGCAGGGCTCAAGTGATATTGACCAATTAGGAAAGATTTTCGCAGCATTTGGAACCCCATCTCTTTCTCAGTGGCCTGATATGTTATACCTTCCTGATTATGTTGAATATCAATACGTGCCTGCCCCTCCTTTGCGTTCTTTATTTCCAATGGCAACTGATGATGCTTTAGACTTGTTGTCTAAGATGTTTACATATGACCCAAAAGAGAGAATTTCAGTGCAGCAGGCATTAGAACACAGATACTTCTCTTGTCCTCCTCCGCCCACAGATCCAGAAAAGCTTCCAAGACCTGCCCCTAAGAGGGAAATTAAGGAATCAGATTTGAATCCACACGAGGGTCCAATTGTCTTATCACCTGCGAGGAAGTCTAGGAGAATAATTCGTGATGGATTTGAAGGGAATTCATTGCAAGGAGATAATATGGATGAAAATCATGCTATCCTCAAACAGACAGTTGGTGATAATACAGGGAAGAGTGAGCAAGCAATGTCGCTAGATTTTTCTGTCTTTGGATTAAAACCTCCAAATAGACCAACAATCAACAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAATTTCAGTAA 1230 0.4024 MTELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRIGKQKEGVNFTALREIKLLKELKDPNIIELIDCFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAHCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSLSQWPDMLYLPDYVEYQYVPAPPLRSLFPMATDDALDLLSKMFTYDPKERISVQQALEHRYFSCPPPPTDPEKLPRPAPKREIKESDLNPHEGPIVLSPARKSRRIIRDGFEGNSLQGDNMDENHAILKQTVGDNTGKSEQAMSLDFSVFGLKPPNRPTINSADRSHLKRKLDLEFQ 409
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02198 409 MobiDBLite consensus disorder prediction 395 409 - -
Trre12g02198 409 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02198 409 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02198 409 MobiDBLite consensus disorder prediction 294 327 - -
Trre12g02198 409 PANTHER CELL DIVISION PROTEIN KINASE 12 298 - -
Trre12g02198 409 ProSitePatterns Protein kinases ATP-binding region signature. 20 49 IPR017441 GO:0005524
Trre12g02198 409 SUPERFAMILY Protein kinase-like (PK-like) 10 300 IPR011009 -
Trre12g02198 409 MobiDBLite consensus disorder prediction 381 409 - -
Trre12g02198 409 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Trre12g02198 409 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Trre12g02198 409 MobiDBLite consensus disorder prediction 306 321 - -
Trre12g02198 409 FunFam Cyclin-dependent kinase D-1 5 94 - -
Trre12g02198 409 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02198 409 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Trre12g02198 409 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Trre12g02198 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre12g02198 Trre-Chr12 23773817 23780288 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02198 4 408 Core Cell Cycle Gene Families AT1G73690 73.645 0.0 607
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Trre12g02198 Pkinase 1.7e-70 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02198 K02202 - gmx:100814263 721.465