LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g02198	ATGACAGAATTAGATCCCTCTAAGAAAGTAGCTGATAGGTATCTCAAACGTGAGGTCCTAGGTGAAGGTACCTATGGTGTTGTTTACAAAGCCATTGATACTCAGACAGGACAGACCGTTGCTATTAAGAAGATTCGGATTGGCAAGCAGAAAGAAGGGGTGAATTTTACAGCTCTTAGAGAAATTAAATTGCTTAAAGAACTCAAAGATCCAAATATAATTGAGTTGATTGATTGCTTCCCGCATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATAAGAGATCGAAATATTTTTCTTTCACCTGGTGACATTAAATCTTACCTTCAAATGACGCTAAAAGGTCTTGCTCATTGTCACAAAAAATGGGTATTGCATAGGGATATGAAACCAAATAATTTGTTGATAGGACCCAACGGACAGTTGAAACTTGCCGATTTTGGTTTAGCACGTATATTTGGAAGCCCAGATCGCAGATTCACTCATCAGGTATTTGCACGGTGGTATAGAGCACCTGAGCTATTATTTGGCACTAAGCAGTATGGCCCAGGGGTAGATGTTTGGGCTGCAGCCTGTATATTTGCTGAGCTTCTTCTTCGTCGACCCTTTTTGCAGGGCTCAAGTGATATTGACCAATTAGGAAAGATTTTCGCAGCATTTGGAACCCCATCTCTTTCTCAGTGGCCTGATATGTTATACCTTCCTGATTATGTTGAATATCAATACGTGCCTGCCCCTCCTTTGCGTTCTTTATTTCCAATGGCAACTGATGATGCTTTAGACTTGTTGTCTAAGATGTTTACATATGACCCAAAAGAGAGAATTTCAGTGCAGCAGGCATTAGAACACAGATACTTCTCTTGTCCTCCTCCGCCCACAGATCCAGAAAAGCTTCCAAGACCTGCCCCTAAGAGGGAAATTAAGGAATCAGATTTGAATCCACACGAGGGTCCAATTGTCTTATCACCTGCGAGGAAGTCTAGGAGAATAATTCGTGATGGATTTGAAGGGAATTCATTGCAAGGAGATAATATGGATGAAAATCATGCTATCCTCAAACAGACAGTTGGTGATAATACAGGGAAGAGTGAGCAAGCAATGTCGCTAGATTTTTCTGTCTTTGGATTAAAACCTCCAAATAGACCAACAATCAACAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAATTTCAGTAA	1230	0.4024	MTELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRIGKQKEGVNFTALREIKLLKELKDPNIIELIDCFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAHCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSLSQWPDMLYLPDYVEYQYVPAPPLRSLFPMATDDALDLLSKMFTYDPKERISVQQALEHRYFSCPPPPTDPEKLPRPAPKREIKESDLNPHEGPIVLSPARKSRRIIRDGFEGNSLQGDNMDENHAILKQTVGDNTGKSEQAMSLDFSVFGLKPPNRPTINSADRSHLKRKLDLEFQ	409

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g02198	409	MobiDBLite	consensus disorder prediction	395	409	-	-
	Trre12g02198	409	Pfam	Protein kinase domain	16	294	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g02198	409	ProSiteProfiles	Protein kinase domain profile.	14	294	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g02198	409	MobiDBLite	consensus disorder prediction	294	327	-	-
	Trre12g02198	409	PANTHER	CELL DIVISION PROTEIN KINASE	12	298	-	-
	Trre12g02198	409	ProSitePatterns	Protein kinases ATP-binding region signature.	20	49	IPR017441	GO:0005524
	Trre12g02198	409	SUPERFAMILY	Protein kinase-like (PK-like)	10	300	IPR011009	-
	Trre12g02198	409	MobiDBLite	consensus disorder prediction	381	409	-	-
	Trre12g02198	409	CDD	STKc_CDK7	13	307	IPR037770	GO:0005675\|GO:0008353\|GO:0070985
	Trre12g02198	409	Gene3D	Transferase(Phosphotransferase) domain 1	95	310	-	-
	Trre12g02198	409	MobiDBLite	consensus disorder prediction	306	321	-	-
	Trre12g02198	409	FunFam	Cyclin-dependent kinase D-1	5	94	-	-
	Trre12g02198	409	SMART	serkin_6	14	294	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g02198	409	Gene3D	Phosphorylase Kinase; domain 1	5	94	-	-
	Trre12g02198	409	FunFam	Putative cyclin-dependent kinase 7	95	310	-	-
	Trre12g02198	409	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	132	144	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g02198	Trre-Chr12	23773817	23780288	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g02198	4	408	Core Cell Cycle Gene Families	AT1G73690	73.645	0.0	607

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CDK7	Trre12g02198		Pkinase	1.7e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g02198	K02202		-	gmx:100814263	721.465