Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02193 ATGGAAAAGAAAAAAGTTACGGTACCTCTTGTTTGTCACGGTCACTCTCGTCCAGTTGTTGATCTCTATTACAGTCCTGTTACTCCCGATGGTTTTTTTCTTATTAGCGCAAGCAAAGATGCTAGTCCTATGCTGAGGAATGGAGAGACTGGAGATTGGATTGGAACATTTGAAGGGCACAAAGGTGCAGTTTGGAGTTGTTGCTTGGATGCTAATGCTTTGCGGGCAGCAACTGCTTCCGCTGATTTCTCAACAAAAGTTTGGGATGCATTAACTGGCGACGAGTTACATTCTTTTGAGCATAAGCACATTGTTAGAGCATGTGCTTTTTCTGAGGATACTCACCTTTTGCTCACTGGGGGAGCAGAGAAAATTCTCCGAATTTATGATTTGAATCGGCCTGATGCACCACCCAAAGAAGTGGATAAATCTCCCGGTTCAGTCAGGAGTGTTGCATGGCTTCATAGTGACCAGACAATATTGAGTTCATGTACTGATATGGGAGGCGTCAGGCTATGGGATGTAAGAACTGGTAACATAGTTCAGACACTTGACACCAAGTCGCCTATGACTAGTGCTGAAGTAAGTCAGGATGGTCGTTATATTACAACTGCCGATGGTTCTACTGTTAAGTTTTGGGATGCAAATCACTATGGATTGGTGAAGAGCTATGATATGCCGTGCAATGTGGAATCAGCTTCATTGGAGCCCAAGTTTGGGAACAAGTTTGTTGCTGGGGGAGAAGACTTGTGGGTTCATGTGTTTGATTTCCATACTGGCAATGAGATTGCATGCAACAAAGGCCATCATGGTCCTGTTCACTGTGTTCGTTTCTCTCCTGGTGGAGAATCATATGCATCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACAGGTCCATTGACTCATGATGAATCAGAGGGTTTACCACCAAATGGAACCCTGGAAAAGGAGAAAGCAAATGCAGAGGAGGATATTTCACGCAGGATTGAGGGTTTTCATATTGCAGACGAGGCCAAGTCCAAAGGAAAGGAAGAGGCGGGGGAGGAATTATGA 1059 0.4466 MEKKKVTVPLVCHGHSRPVVDLYYSPVTPDGFFLISASKDASPMLRNGETGDWIGTFEGHKGAVWSCCLDANALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGAEKILRIYDLNRPDAPPKEVDKSPGSVRSVAWLHSDQTILSSCTDMGGVRLWDVRTGNIVQTLDTKSPMTSAEVSQDGRYITTADGSTVKFWDANHYGLVKSYDMPCNVESASLEPKFGNKFVAGGEDLWVHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTHDESEGLPPNGTLEKEKANAEEDISRRIEGFHIADEAKSKGKEEAGEEL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02193 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Trre12g02193 352 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Trre12g02193 352 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Trre12g02193 352 Pfam WD domain, G-beta repeat 265 297 IPR001680 GO:0005515
Trre12g02193 352 SMART WD40_4 177 214 IPR001680 GO:0005515
Trre12g02193 352 SMART WD40_4 92 130 IPR001680 GO:0005515
Trre12g02193 352 SMART WD40_4 259 298 IPR001680 GO:0005515
Trre12g02193 352 SMART WD40_4 5 47 IPR001680 GO:0005515
Trre12g02193 352 SMART WD40_4 134 174 IPR001680 GO:0005515
Trre12g02193 352 SMART WD40_4 50 89 IPR001680 GO:0005515
Trre12g02193 352 SMART WD40_4 217 256 IPR001680 GO:0005515
Trre12g02193 352 FunFam Serine-threonine kinase receptor-associated protein 8 321 - -
Trre12g02193 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Trre12g02193 352 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Trre12g02193 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 132 IPR001680 GO:0005515
Trre12g02193 352 MobiDBLite consensus disorder prediction 333 352 - -
Trre12g02193 352 MobiDBLite consensus disorder prediction 302 324 - -
Trre12g02193 352 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 342 - -
Trre12g02193 352 Gene3D - 9 321 IPR015943 GO:0005515
Trre12g02193 352 CDD WD40 14 298 - -
Trre12g02193 352 SUPERFAMILY WD40 repeat-like 4 300 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02193 Trre-Chr12 23715448 23721021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02193 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 29.448 2.32e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02193 K13137 - gmx:100818422 637.106