Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02184 ATGGATTGCCGATTTGAGACCGCGGAAACTCGAAGGAACAAGTGTGCAGCATGCTATAGGCAGTTCAACAAGGTGGAGCACCTAGTGGATCACATGAAGATCTCTTACCATTCTGTTCATGAACCAACTTGTGGCGTTTGCAGGAAACATTGCAGATCTTTTGAGTCTCTAAGGGAACATCTTATAGTCCTTGATAGCCCTAACTCTCGCAGGATTCACCAACAAAAGTGCCAACTCAATGGATTAAATGGAATATGTGGCCGCTTTTCAAACTTGGGAATTCGTGATAATTTGACAATTGGTGGTGGAAGAGGACCACAAGTAGTTGCACTAGCTTGTAAAATGGTGGGAGGAGGAAGTGATGGCTCATTGGATATATGTGCAAGAGTTTGCTTAATAGATGAGAATGAGAACATTATCTTCCATTCTTATGTCACTCCACCAATTCCAGTTACAAACTTGAGGTATGACACAACAGGTATTAGACATGAATACTTAAGGGATGCAATGCCATTGAAACTAGTTCAAAGAAAGATTCAAGAGTTCCTTTGTAATGGAGAACCTATGTGGACAATTCGTTCAAAAGGAGGAAAAGCTAGGATTCTTGTGGGTCATGGTTTAGATCATGACCTTGCTTCTTTGCAAATTGAGTATCCAACACCAAAAATAAGGGACACTGCAAAATACCCTCCACTCATGAAAACAAGCAAGCTCAGCAATTCACTCAAATACTTAACACAAGCATATCTTGGATATGACATTCAAACTGGGATACAAGATCCTTATGATGATTGTGTTGCAACAATGAGACTATACATGAGAATGAGAGCACAAATACACAAAATAGAAGATTACCCTTTGGCTTCTGATCCACAAAACAGAAACAATTTTGCTTCATGGAGGCAAAGTGAGCTTGAAAGAATGAGTCCTGAACAAATGCTAGATATCTCAAGATCTGATTACTACTGTTGGTGCATGGATCCATAA 987 0.3982 MDCRFETAETRRNKCAACYRQFNKVEHLVDHMKISYHSVHEPTCGVCRKHCRSFESLREHLIVLDSPNSRRIHQQKCQLNGLNGICGRFSNLGIRDNLTIGGGRGPQVVALACKMVGGGSDGSLDICARVCLIDENENIIFHSYVTPPIPVTNLRYDTTGIRHEYLRDAMPLKLVQRKIQEFLCNGEPMWTIRSKGGKARILVGHGLDHDLASLQIEYPTPKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYDDCVATMRLYMRMRAQIHKIEDYPLASDPQNRNNFASWRQSELERMSPEQMLDISRSDYYCWCMDP 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02184 328 Gene3D - 105 288 IPR036397 GO:0003676
Trre12g02184 328 SMART exoiiiendus 107 281 IPR013520 -
Trre12g02184 328 CDD REX4_like 109 272 IPR037431 GO:0006364|GO:0008408
Trre12g02184 328 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Trre12g02184 328 Pfam Exonuclease 124 272 IPR013520 -
Trre12g02184 328 SUPERFAMILY Ribonuclease H-like 121 279 IPR012337 -
Trre12g02184 328 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 17 315 IPR047021 GO:0004527
Trre12g02184 328 FunFam RNA exonuclease 4 104 291 - -
Trre12g02184 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02184 Trre-Chr12 23642594 23645097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02184 1 327 C2H2 Transcription Factor Family AT3G27970 70.339 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02184 - - gmx:100813973 587.8