Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02183 ATGGATTGCCGATTTGAGACCGCGGAAACTCGAAGGAACAAGTGTGCAGCATGCTATAGGCAGTTCAACAAGGTGGAGCACCTAGTGGATCACATGAAGATCTCTTACCATTCTGTTCATGAACCAACTTGTGGCGTTTGCAGGAAACATTGCAGATCTTTTGAGTGCAAGTTTTGCTTGAAAGTCCTTGATAGCCCTAACTCTCGCAGGATTCACCAACAAAAGTGCCAACTCAATGGATTAAATGGAATATGTGGCCGCTTTTCAAACTTGGGAATTCGTGATAATTTGACAATTGGTGGTGGAAGAGGACCACAAGTAGTTGCACTAGCTTGTAAAATGGTGGGAGGAGGAAGTGATGGCTCATTGGATATATGTGCAAGAGTTTGCTTAATAGATGAGAATGAGAACATTATCTTCCATTCTTATGTCACTCCACCAATTCCAGTTACAAACTTGAGGTATGACACAACAGGTATTAGACATGAATACTTAAGGGATGCAATGCCATTGAAACTAGTTCAAAGAAAGATTCAAGAGTTCCTTTGTAATGGAGAACCTATGTGGACAATTCGTTCAAAAGGAGGAAAAGCTAGGATTCTTGTGGGTCATGGTTTAGATCATGACCTTGCTTCTTTGCAAATTGAGTATCCAACACCAAAAATAAGGGACACTGCAAAATACCCTCCACTCATGAAAACAAGCAAGCTCAGCAATTCACTCAAATACTTAACACAAGCATATCTTGGATATGACATTCAAACTGGGATACAAGATCCTTATGATGATTGTGTTGCAACAATGAGACTATACATGAGAATGAGAGCACAAATACACAAAATAGAAGATTACCCTTTGGCTTCTGATCCACAAAACAGAAACAATTTTGCTTCATGGAGGCAAAGTGAGCTTGAAAGAATGAGTCCTGAACAAATGCTAGATATCTCAAGATCTGATTACTACTGTTGGTGCATGGATCCATAA 984 0.3984 MDCRFETAETRRNKCAACYRQFNKVEHLVDHMKISYHSVHEPTCGVCRKHCRSFECKFCLKVLDSPNSRRIHQQKCQLNGLNGICGRFSNLGIRDNLTIGGGRGPQVVALACKMVGGGSDGSLDICARVCLIDENENIIFHSYVTPPIPVTNLRYDTTGIRHEYLRDAMPLKLVQRKIQEFLCNGEPMWTIRSKGGKARILVGHGLDHDLASLQIEYPTPKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYDDCVATMRLYMRMRAQIHKIEDYPLASDPQNRNNFASWRQSELERMSPEQMLDISRSDYYCWCMDP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02183 327 FunFam RNA exonuclease 4 103 290 - -
Trre12g02183 327 Pfam Exonuclease 123 271 IPR013520 -
Trre12g02183 327 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Trre12g02183 327 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 81 314 IPR047021 GO:0004527
Trre12g02183 327 CDD REX4_like 108 271 IPR037431 GO:0006364|GO:0008408
Trre12g02183 327 SMART exoiiiendus 106 280 IPR013520 -
Trre12g02183 327 Gene3D - 104 287 IPR036397 GO:0003676
Trre12g02183 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Trre12g02183 327 SUPERFAMILY Ribonuclease H-like 120 278 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02183 Trre-Chr12 23642594 23645097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02183 1 326 C2H2 Transcription Factor Family AT3G27970 69.209 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02183 - - gmx:100813973 588.956