Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02182 ATGGATGGAAACAAAGACGATGCATTGAAATCGTTGAAAATCGGTAAAGAAGCGTTAGAAAGTGGAGATCGTAATCGCGCTTTGAAGTTTCTTAACAAAGCTCGCCGTCTCGATCCGAATCTTCCAATTGATGATCTGCTTTCCACTATAGACACCGATGCAGGCGATCATTCCACATCAGCTGCCGAGCCGCGGTCGAATCAGTCGGATCAACAACCTTCCATTCGTCGAAGGACTGCTGTTCCAGTGCAGGGGACTTCATCGTCGTCGGCGGCGACTTCGTATAGTGAGGAGCAAGTTTTGATTATAAGAGAAATTAAGAGGAAGAAGAATTACTATGATATTTTAGGGTTGGAGAAGAATTGCACGGTGGATGATGTGCGAAAATCGTATAGGAAGCTGTCTTTGAAGGTTCATCCTGACAAGAACAAAGCCCCGGGTGCTGAGGAAGCTTTTAAGTCGGTTTCGAAGGCTTTTCAGTGTCTTAGTAATGAGGAGAGTAAGAGAAAGTATGATCTTTCTGGAGAAGATGAGGTTGTTTATGAAAGGCGCGCGGCTGCTAGACCGGCGGCTAGAGGTTTTAATGGTTACTATGAAGCTGATATTGATGCTGAGGAGATATTTAGGAATTTCTTCTTTGGAGGAATGGCACCTGCTGCTAATTTTGGTGGGTTTAGTTTTGGTGGGCCGGGGATGGCTCATCGACAGGCTGCTGCTGATAATGGCTCTGGCGGGTTCAATGTTCGTGCTTTGATTCAGTTGCTTCCGGTGCTTCTTATTTTGCTTCTTAACTTTTTGCCTTCATCGGAGCCAGTGTATACTCTTCAACAGAACTATCCTTATGAACACCGGCTTACTACACCGAAGGGTGTTAACTACTATGTTAAGTCTACTAAGTTTGAAGAAGATTATCCGTTGGATAGCCGTGAACGTGTTACGATTGAGGAACGGGTTGAGAGGGAATATTTTGGTATTCTTCGCCAGAATTGTCAGTTTGAGATGCAGCGACGCCAATGGGGATATATCCGAGAAACGCCTCACTGTGATATGCTTCGGAAGTTTGATTTTGTCCGTTGA 1077 0.4494 MDGNKDDALKSLKIGKEALESGDRNRALKFLNKARRLDPNLPIDDLLSTIDTDAGDHSTSAAEPRSNQSDQQPSIRRRTAVPVQGTSSSSAATSYSEEQVLIIREIKRKKNYYDILGLEKNCTVDDVRKSYRKLSLKVHPDKNKAPGAEEAFKSVSKAFQCLSNEESKRKYDLSGEDEVVYERRAAARPAARGFNGYYEADIDAEEIFRNFFFGGMAPAANFGGFSFGGPGMAHRQAAADNGSGGFNVRALIQLLPVLLILLLNFLPSSEPVYTLQQNYPYEHRLTTPKGVNYYVKSTKFEEDYPLDSRERVTIEERVEREYFGILRQNCQFEMQRRQWGYIRETPHCDMLRKFDFVR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02182 358 PANTHER AT29763P-RELATED 1 353 - -
Trre12g02182 358 MobiDBLite consensus disorder prediction 48 91 - -
Trre12g02182 358 SMART dnaj_3 110 167 IPR001623 -
Trre12g02182 358 ProSitePatterns Nt-dnaJ domain signature. 152 171 IPR018253 -
Trre12g02182 358 ProSiteProfiles TPR repeat profile. 8 41 IPR019734 GO:0005515
Trre12g02182 358 CDD DnaJ 111 164 IPR001623 -
Trre12g02182 358 ProSiteProfiles dnaJ domain profile. 111 175 IPR001623 -
Trre12g02182 358 MobiDBLite consensus disorder prediction 52 91 - -
Trre12g02182 358 PRINTS DnaJ domain signature 147 167 IPR001623 -
Trre12g02182 358 PRINTS DnaJ domain signature 131 146 IPR001623 -
Trre12g02182 358 PRINTS DnaJ domain signature 113 131 IPR001623 -
Trre12g02182 358 SUPERFAMILY Chaperone J-domain 107 227 IPR036869 -
Trre12g02182 358 FunFam Chaperone protein dnaJ 49 107 223 - -
Trre12g02182 358 Gene3D DnaJ domain 107 222 IPR036869 -
Trre12g02182 358 Pfam DnaJ domain 111 172 IPR001623 -
Trre12g02182 358 Pfam Domain of unknown function (DUF1977) 267 338 IPR015399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02182 Trre-Chr12 23554308 23555384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02182 106 183 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.366 2.21e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02182 K09518 - gmx:100788812 521.931