Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02171 ATGGCGGAATCAGACCACGACCACCACACCTCACCGGAGCACGATAACCACAGTCATAAGAACAAGAAGCTTCGCAAGAGGAAAAGATCTCGTAAGTTAGAACAAGAAGTTGAAAAACAACAAGAGGAGGAGAATATTGAAAACGCAGAATCTGAAGAAGAAGAAGAGGAGAATAATCATGAACCACAACAAGGAGAAGAAGAAGAAGAAGACAAAAAAGTGGAGACTATTGTGTCTTCTGGAATTATGAGCAAAGAGTCTTTTTCGTCTCTAGGGTTATCTCAACCTACTTCTAAGTCTATAACTGATATGGGTTTTAATCGTATGACTCAGATTCAAGCAAAAGCGATTCCGCCGCTTTTGATGGGAAAGGATGTTCTTGGTGCTGCAAGGACAGGTGCTGGTAAAACACTTGCATTTTTAATTCCAGCTGTGGAATTGTTGTACAATGTTCAGTTCACTCCTCGTAACGGAACCGGCGTTGTTGTTATTTGTCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTGGCAAAGGAACTACTGAAGTATCATTCGCAAACTCTTGGATTAGTTATTGGGGGTTCGGGTAGAAAGGGAGAAGCTGAGCGCATTGTTAAAGGGGTAAATCTGTTGGTTGCAACACCTGGCCGGCTTCTTGATCACCTTCAGAATACAAAAGGGTTCATATATAAAAACTTAAAGTGTCTCATGATTGATGAAGCAGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTAATATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCGGCCACACAAACAAAGAAGGTTGAGGATCTCGCCCGCTTATCTTTTCAGACACCTCCTGTCTATGTTGATGTAGATGATGGGAGAAAAAAGGTCACAGTTGAAGGATTGGAACAGGGCTATGTTGTTGTTCCCTGTGCCAAGCGTCTTGTTGTTCTATATTCATTCTTGAAGAGATTTCAATCCAAAAAAGTGATGGTTTTTTTCTCTTCATGCAACTCTGTCAAATTTCATGCTGATCTCCTTAAGTTCATTGGATTAGACTGTTTAAATATTCACGGAAAACAAAAGCAGCATTCCCGGACAACTACCTTCTTCAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATTCCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGAGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAAATGCAATTTCTTCGCTATTTGAAGGCGGCAAAGATTCCTGTGAAAGAGTATGCATTTGATGATAAAAAGCTTGCAAATGTACAATCTCAGCTGGAGAAGATGGTGGCCAGCATTTATCATTTGAACACTTTGGCTAAAGAGGCTTATAGGTCATATATATTGGCATATAATGCACATTCTATGAAGGAAATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTACTTCATTCAGTTTTACAAACCCACCAAAGATAAGTCTGAATATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATCCGCAAAGTGGAAGGAAGAAGACATTGA 1656 0.407 MAESDHDHHTSPEHDNHSHKNKKLRKRKRSRKLEQEVEKQQEEENIENAESEEEEEENNHEPQQGEEEEEDKKVETIVSSGIMSKESFSSLGLSQPTSKSITDMGFNRMTQIQAKAIPPLLMGKDVLGAARTGAGKTLAFLIPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTPPVYVDVDDGRKKVTVEGLEQGYVVVPCAKRLVVLYSFLKRFQSKKVMVFFSSCNSVKFHADLLKFIGLDCLNIHGKQKQHSRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEEMQFLRYLKAAKIPVKEYAFDDKKLANVQSQLEKMVASIYHLNTLAKEAYRSYILAYNAHSMKEIFNVHRLDLQAVATSFSFTNPPKISLNIDSSASKHRKKIRKVEGRRH 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02171 551 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 292 IPR014001 -
Trre12g02171 551 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 238 246 IPR000629 -
Trre12g02171 551 MobiDBLite consensus disorder prediction 1 74 - -
Trre12g02171 551 Pfam DEAD/DEAH box helicase 110 281 IPR011545 GO:0003676|GO:0005524
Trre12g02171 551 Gene3D - 305 547 IPR027417 -
Trre12g02171 551 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 114 IPR014014 GO:0003724
Trre12g02171 551 PANTHER RNA HELICASE 40 471 - -
Trre12g02171 551 MobiDBLite consensus disorder prediction 45 64 - -
Trre12g02171 551 Gene3D - 8 296 IPR027417 -
Trre12g02171 551 SMART helicmild6 346 427 IPR001650 -
Trre12g02171 551 CDD SF2_C_DEAD 307 437 - -
Trre12g02171 551 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 476 IPR001650 -
Trre12g02171 551 SMART DUF4217_3 467 530 IPR025313 -
Trre12g02171 551 Pfam Helicase conserved C-terminal domain 321 426 IPR001650 -
Trre12g02171 551 FunFam RNA helicase 303 533 - -
Trre12g02171 551 Pfam Domain of unknown function (DUF4217) 468 528 IPR025313 -
Trre12g02171 551 SMART ultradead3 105 310 IPR014001 -
Trre12g02171 551 MobiDBLite consensus disorder prediction 1 18 - -
Trre12g02171 551 CDD DEADc_DDX18 97 294 IPR044773 GO:0003724|GO:0005524
Trre12g02171 551 Coils Coil 23 66 - -
Trre12g02171 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 448 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02171 Trre-Chr12 23445552 23450503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02171 86 445 Eukaryotic Initiation Factors Gene Family AT3G13920 30.663 6.42e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02171 K13179 - gmx:100798290 884.019