Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02166 ATGGAGCCCATGGATATTGTTGCAAAATCAAAGGAAGATGCTTCGCTACCAAAAGCAACAATGACGAAAATTATTAAAGAGATGTTGCCCCCTGATGTGCGTGTTGCAAGAGATACCCAGGATTTGTTGATTGAATGTTGCGTAGAGTTCATAAACCTCGTCTCATCAGAGTCAAATGAAGTATGTAACAGAGAAGAAAGAAGGACGATTGCACCTGAGCATGTATTGAAGGCTTTAGGGGTTCTTGGATTTGGCGACTACATTGAGGAAGTTTATGCAGCATATGAACAGCACAAGACGGAGACAATGCAGGACACTATAAAAGCTGCCAAGTGGAGTGGTGCAGCTGAGATGACAGAAGAACAAGCATTAGCGGAGCAGCAAAGGATGTTTGCAGAGGCGCGTGCTAGAATGAATGGAGGGACCATTTCTTCCAATCAACCTGATGCTGACCAAAGTTTAGAAAACTAA 471 0.4331 MEPMDIVAKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALGVLGFGDYIEEVYAAYEQHKTETMQDTIKAAKWSGAAEMTEEQALAEQQRMFAEARARMNGGTISSNQPDADQSLEN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02166 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Trre12g02166 156 Coils Coil 115 135 - -
Trre12g02166 156 MobiDBLite consensus disorder prediction 139 156 - -
Trre12g02166 156 FunFam Negative cofactor 2 beta 6 142 - -
Trre12g02166 156 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
Trre12g02166 156 Gene3D Histone, subunit A 4 142 IPR009072 GO:0046982
Trre12g02166 156 MobiDBLite consensus disorder prediction 137 156 - -
Trre12g02166 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02166 Trre-Chr12 23360607 23363681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02166 1 149 CCAAT-DR1 Transcription Factor Family AT5G23090 83.221 5.39e-91 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre12g02166 CBFD_NFYB_HMF 2.6e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02166 K21751 - gmx:547635 280.026