LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g02161	ATGGGTAGTGGTAGAGTAAGAAAGAAGAGGAACCAGTTGAGCAGAATCCATGCATTCTCAAGTGGGAAAACTTCATTCAAAGGTGAACATTCACTTATAGGAGGACCTGGTTTTGGAAGGATAGTTTACTGTGAAAAAACAGAAAGTTGTGGTGGTGGTGAGAGTAGTAGTAGTACTAGTACTGTTGTGAATTATTGTGATAATTATGTGAGAACTACAAAATACACAATGTTCACTTTCATCCCTAAATCATTGTTTGAGCAATTCAGAAGAGTTGCAAATTTTTACTTTCTTGTTTGTGCAATCTTGTCTTTTTTTCCTGTTTCTCCTTACTCTGCTGTTAGCAATGTTGTTCCTCTTGTTGTTGTGGTTGCTGCTACAATTGGAAAAGAGGCTGTTGAGGATTGGAGAAGAATGAAGCAGGATATCGAGATGAATAACAGAAAGGTTAAAGTCCATAAAGAAGGTGTTTTTGACTACTCTAAATGGCGTGATTTGAAAGTTGGAGACATAGTGAAGGTTGAAAAAGATGAATTTTTTCCTGCTGATCTAATCCTACTTTCATCAAGCTATGAAGATGCTATTTGTTATGTTGAGACAATGAATCTCGATGGAGAAACAAATCTTAAACTCAAACAAGCACTTGAAGAAACTTCCAAATTTCAAGAAGACTCCACTTTCCGAAATTTCAAAGCAATCATTAAATGTGAAGATCCAAATGCATATCTATACTCTTTCATAGGAAACATTGAACTTGAAGATCAATTATATCCGCTTTCGCCTCAGCAGTTACTGCTTAGGGACTCAAAGCTTAGGAACACTGATTTTATATATGGCGTAGTTATCTTTACCGGCCATGATACAAAAGTTATGCAGAATTCGACCGACTCTCCATCTAAGAGAAGCAAAGTCGAGAAGCGAATGGATAAGATAATCTACTTTCTCTTCTCAGTTTTGTTTTTTATTTCTTTTATTGGTTCAATTTTCTTCGGCATTGCAACAAGTGAGGATCTTGAAAATGGAATAATGAAGAGATGGTACCTCAGACCAGATGATACTACGATCTACTACAGTCCAAAGAAAGCACCGATTGCGGCAATGCTCCATTTCTTGACTGCACTAATGTTGTATAGTTACTTGATTCCAATTTCTTTGTATGTCTCCATTGAAATTGTGAAAGTCCTTCAAAGCATCTTCGTCAACCACGATGTACACATGTATTATGAGGAAACTGACCAGCCTGCATGCGCTCGTACATCAAATTTGAATGAAGAACTTGGTCAAGTTGATACTATTCTTTCGGATAAAACAGGAACTTTGACTTGTAATTCTATGGAATTCGTCAAGTGTTCAATTGCTGGGATCGCCTACGGACGAGGTGTTACAGAAGTTGAGAGAGCTCTAGCAAGGAGAAAAGACTTAGATGGCAATGTTGCGGAGATTTCTGAAGCAAAGTCATCCATTAAAGGTTTTAACTTCATGGATGAAAGGATTATGAATGGAAATTGGGTCAAGGAACCTCACGCCAATGTAATCCAGGACTTCATACGTTTGTTGGCAGTATGCCATACTGCAATACCTGAAGTTGATGAAGAAACCGGTAACGTTTCTTATGAAGCCGAGTCACCGGATGAGTCAGCTTTTGTAATCGCAGCTAAACAACTTGGATTTGAGTTTTATGAAAGGACCCAGACAACTATTTCCCTGCGCGAGTTCAATTCCATAATCGGCAGGACTATTATAAGGTCCTACAAACATTTGAATATATTAGAGTTTAGTAGTGCAAGAAAAAGAATGTCTGTTATTATAAGAGATGAGGAGGGGAAACTACTACTTCTTAGCAAAGGGGCTGACAGTGTCATGTTTGAACGGCTTGGAAAGAATGGAAGGGAGTTTGAAGAAAAGACTAAGCAGCACATTAATGAATATGCTGATGCTGGTTTGAGGACCTTGATACTTGCTTATCGCGAACTTGATGAAGAAGAGTACGATCTTTTCAATAAAGAATTGATGGAAGCCAAGAGCTTAGTAAGTGCGGATCGGGAGCAGATTGTGGAGGAAGTATTAGAAAAGATTGAGAAAGATTTAATTCTTCTCGGTGCTACTGCAGTTGAAGACAAACTTCAAATTGGGGTTCCTGAATGCATTGACAAGCTAGCACAAGCAGGAATTAAGTTATGGATTTTGACTGGTGATAAAATGGAGACAGCAATCAATGTTGGGTTTGCTTGTAGTTTACTTAGGCAAGGAATGAAGCAAATTATTATTAGTTCCGACACTCCAAATATCAAATCACTAGAGAAAGTGGAGAACAATTCTGCTGCTGCTTTTGCAATCAAGGCAAATGTTCTTTCTCAATTAAGGGAAGGAAGGGAATTACTTGCTGCATCTAATTTGGTTGCGCATCTGTTATATGCTGCCGTTCATCTCCAAAGCAAAAAACACTTGTTACTCGACTAG	2460	0.3817	MGSGRVRKKRNQLSRIHAFSSGKTSFKGEHSLIGGPGFGRIVYCEKTESCGGGESSSSTSTVVNYCDNYVRTTKYTMFTFIPKSLFEQFRRVANFYFLVCAILSFFPVSPYSAVSNVVPLVVVVAATIGKEAVEDWRRMKQDIEMNNRKVKVHKEGVFDYSKWRDLKVGDIVKVEKDEFFPADLILLSSSYEDAICYVETMNLDGETNLKLKQALEETSKFQEDSTFRNFKAIIKCEDPNAYLYSFIGNIELEDQLYPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVMQNSTDSPSKRSKVEKRMDKIIYFLFSVLFFISFIGSIFFGIATSEDLENGIMKRWYLRPDDTTIYYSPKKAPIAAMLHFLTALMLYSYLIPISLYVSIEIVKVLQSIFVNHDVHMYYEETDQPACARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIAGIAYGRGVTEVERALARRKDLDGNVAEISEAKSSIKGFNFMDERIMNGNWVKEPHANVIQDFIRLLAVCHTAIPEVDEETGNVSYEAESPDESAFVIAAKQLGFEFYERTQTTISLREFNSIIGRTIIRSYKHLNILEFSSARKRMSVIIRDEEGKLLLLSKGADSVMFERLGKNGREFEEKTKQHINEYADAGLRTLILAYRELDEEEYDLFNKELMEAKSLVSADREQIVEEVLEKIEKDLILLGATAVEDKLQIGVPECIDKLAQAGIKLWILTGDKMETAINVGFACSLLRQGMKQIIISSDTPNIKSLEKVENNSAAAFAIKANVLSQLREGRELLAASNLVAHLLYAAVHLQSKKHLLLD	819

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g02161	819	Gene3D	-	124	295	-	-
	Trre12g02161	819	FunFam	Phospholipid-transporting ATPase	126	295	-	-
	Trre12g02161	819	FunFam	Phospholipid-transporting ATPase	541	699	-	-
	Trre12g02161	819	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	498	701	IPR023299	GO:0000166
	Trre12g02161	819	SUPERFAMILY	HAD-like	428	748	IPR036412	-
	Trre12g02161	819	NCBIfam	phospholipid-translocating P-type ATPase	65	774	IPR006539	GO:0000287\|GO:0005524\|GO:0015914\|GO:0016020\|GO:0140326
	Trre12g02161	819	Gene3D	-	703	799	IPR023214	-
	Trre12g02161	819	PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	45	804	-	-
	Trre12g02161	819	Pfam	Phospholipid-translocating ATPase N-terminal	63	115	IPR032631	-
	Trre12g02161	819	SUPERFAMILY	Calcium ATPase, transmembrane domain M	65	583	IPR023298	-
	Trre12g02161	819	Gene3D	-	464	702	IPR023299	GO:0000166
	Trre12g02161	819	SUPERFAMILY	Calcium ATPase, transduction domain A	147	293	IPR008250	-
	Trre12g02161	819	ProSitePatterns	E1-E2 ATPases phosphorylation site.	435	441	IPR018303	-
	Trre12g02161	819	Pfam	Cation transport ATPase (P-type)	522	626	-	-
	Trre12g02161	819	Pfam	E1-E2 ATPase	145	370	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g02161	Trre-Chr12	23330622	23336037	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g02161	12	798	Primary Pumps ATPases	AT1G68710	68.664	0.0	1149

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g02161	K01530		-	gmx:100797039	1259.59