Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02142 ATGAACAATCTCCTTGGAGAGGAAATGGAGCAATATCAAAAGAAGAGGAAATCTTGTGATGAACCCTCTGCAAACTTGAGGACATCAAGGAGAAGACTATGCAACAACAAAAATGAAGAAGAGGGAAACAACCACAACAAATCGGTCTCAACAACGCTAAAGCTTTATGATGATCCGTGGAAGATCAAAAAGACGCTAACCGAGAGTGATCTCGGAATCTTGAGCAGACTCTTGTTAGCTGCAGACTTGGTGAAGAAACAAATTTTGCCTATGTTGGATCTTGATGACGCAAGAGCTGCAGAGACCGAGGAAGGATCCCCGGTCAATGTTTGGGACATGGAAACAAATTCCATGCACCAACTTGTTCTAAAGCGATGGTCTTCGTCCAAAAGTTATGTTCTTATTGGTAAATGGAACCATGATTTCGTGAGAAGAAGAGATCTCAAGAAAGGAGATGAAATTGGATTTCAATGGGATCCTTTTAACCGCGCTTTCAATTTTTGTGTTCTTAAACGGGCTACCATGTCTCAATAA 534 0.412 MNNLLGEEMEQYQKKRKSCDEPSANLRTSRRRLCNNKNEEEGNNHNKSVSTTLKLYDDPWKIKKTLTESDLGILSRLLLAADLVKKQILPMLDLDDARAAETEEGSPVNVWDMETNSMHQLVLKRWSSSKSYVLIGKWNHDFVRRRDLKKGDEIGFQWDPFNRAFNFCVLKRATMSQ 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02142 177 SUPERFAMILY DNA-binding pseudobarrel domain 58 167 IPR015300 -
Trre12g02142 177 MobiDBLite consensus disorder prediction 9 44 - -
Trre12g02142 177 MobiDBLite consensus disorder prediction 1 46 - -
Trre12g02142 177 CDD B3_DNA 60 171 IPR003340 GO:0003677
Trre12g02142 177 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 33 173 - -
Trre12g02142 177 Gene3D - 59 175 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02142 Trre-Chr12 23154694 23155227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02142 62 156 RAV Transcription Factor Family AT1G50680 35.294 7.15e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02142 - - pvu:PHAVU_009G204600g 264.618