Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02112 ATGAGGGAGGCTCACACTCAAAAGGGCGGCCGTCCTTCTTTCTGCTCAGTCGTATGGGACCAGCAAGCTCAACATCTTGTAACTGCTTCTTCTTCCGATGTGTCCGTCTCGATTCATAACCCTATTCTTCCCTCCGCCGCCCCTAAAATCCTCCGTCACCACCGTGACGGTGTTACTGCTTTGGCTCTTAGCCCTAATTCCACTTGTCTTGCTTCTGGATCTGTTGATCATTCTGTTAAACTCTACAAATTTCCAGGTGGAGAGTTTGAGACAAATATAACGAGGTTCACACTTCCGATACGTTCCCTAGCATTTAACAAGAAAGGAAGCATGTTAGCAGCTGCAGGTGATGACGAGGGAATCAAGCTTATAAACACAGTTGATGGCTCCATTGCGAGGGTTCTGAAAGGGCATAAAGGGCCGGTCACTGGCTTAGCTTTTGACCCTAATGGTGAATACTTAGCATCTCTGGACTCAAATGGAACCGTTATCATATGGGAACTGCACTCGGGGAAAAACCTTCACAACCTCAAAGGCATTGCTCCTGACACTGGGTTAGATGTTTCAACCATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACTTTAGCCATTCCCGGATTGAGAAATGATGTCGTGATGTATGATAGGGACACGGCTGAGAAATTGTTCTCTCTGAGAGGGGATCATAACCAGCCTATATGTTTTTTGTGCTGGTCACCCAATGGCAAGTACATGGCTACTTCGGGTTTAGATAAACAGATTCTGATATGGGATGTTGATAGGAAGCAGGATATTGACAGACAGAAGTTTGATGAAATGGTGTGTTGCATGGCATGGAAGCCAATTGGGAATGCCTTGTCTGTTATTGATGTTATGGGAAAATATGGCATATGGGACAATGTTATTCCTTCGTCTATGAAGTCCCCGACTGAGGATATACCTATGCAGGGCAAGAACAGTAAAGGGCTTCTTTTTTATGACGAGGAAGATCAGAACAATAGTTTTAGTGAGAGCTTGAGTGATCTTGGTGAAAATAGTAATGGAGAGTTTGAGCCACCAACTAGCAGGAAAAGATTGCGCAAACATTCCTTGAGCGAGGAAAATTTTGATGAGGATGGAGAAGATGGAATTGATCTATATCCAAAAATCGAGTCTCACAAGAAAAGGAATCGGTCAGTCAAGGAAAATTTGGATAATGGCAATGTGGGATTCAGAAGCACAATGTTACCTAAGGCAAAAATGCAGGAGGCATTTCAACCAGGAGCCACTCCAGTGCAGCCCGGAAAAAGGCGCTTCTTATGCTACAATATGCTTGGAAGTATAACCACTGTCGATCACGATGGGTACTCTCATATTGAGATTGATTTTCATGATACTGGAAGTAGTCCTCGAGTTCCATCAATGACTGACCATTTTGGATTTACAATGGCTGCATTGAATGAGAATGGAAGCGTCTTTGCAAATCCTTGCAAGGGGGAGAAGAACATGAGCACACTCATGTATCGCCCATTTAGTAGCTGGGCTAGTAATAGTGAGTGGTCTATGCGCTTTGAAGGCGAAGAAGTAAAGGTTGTTGCACTTGGTGCTTCCTGGGTGGCTGCAGTAACTAGTTTTAATTATCTTCGAATCTTTACTGAGGGTGGTATGCAGAGACATGTTATTTCGCTAGATGGGCCAGTGGTGACTGCATCGGGTTTCAAGGATAAGCTTGCAGTTGTCACTCATGCTTCTGATCGCCTTTCCTCAAACGATCAGGTGTTAGAGTTTAAGTTATTTAATATAACACATGGGACCCAACCCCTTTGCGGTCGCTTGCCAATAACTCCTGGTTCCTCTCTAAGTTGGTTTGGGTTTAGTGAAGAGGGCCAATTGTGTTCTTATGATTCCAAGGGTGTGCTAAGATTATATACAAGCCAATTTGGTGGTAGCTGGTTCCCAGTCTTAAGTGCTTTTAAAGAGAAGACAGATGAAAACTATTGGATGGTGGGTTTGAATACAAACAAGTTAGTTTGTGTAGTATGCAAAAAGCCTGAGTTTCACCCACAGGTGGTGCCTAAACCAATTCTCACTTTAATGAATCTTGCGTTTCCACTCGCTACCTCTGATTTGGGATCTGAAGCACTTGAAAACGAGTTTATGATGAACAGCATGCATCTCTTTGAGATTCAGAAAAAAATGGAAGAAATGGATAATGCTGGTTTGGATGCTAGCTTACTTGATGATGATGCTTTCAATTTGGAAGCAGCACAAGATAGATGCATACTAAGACTTATAGCATCCTGCTGCAATAGTGATAAACTTGTGAGAGCTACTGAACTTGTGAAGCTTTTGTCACTGGAGAAATCAATGAAAGGTGCAATAAAACTTGTTACTGCTTTGAAGCTTCCAAATTTGGCCGAAAAATTCAATGGCATATTGGAGGAAAGGCTATATAATGAAGTTAAAAAGACCAAGGAGACCAACCTCAAGGAAAACAGTTTTGCACCAGTTACATCAGATACTCTACCTAGCGGTAGCAAGGTCGAAACATCGAAAGCATCTATCATTTCATCATCACCAAATTTATCTGCGCCGTTGTTCACAAAGAAAAATAAAACACAAGAGGCAGCTAAAGATGGAATGAATAAAACTGCAACGGTGGATGGAAGTATGAATGCAAAGCAGATAGGAGGGGATGAAACAAGTGACAAGGAAAAGAATGAAGTGCAAGCTCCTCCACATCCACATAGTTCGTCGATAAAGTTGACAAATAAGCATGGAGCTAACAAATCAGAGCCTAGTTTGGTGACACCAACAAGACCATCCAATCCATTTTTGAAGTCTGCAATAAAATGA 2838 0.4253 MREAHTQKGGRPSFCSVVWDQQAQHLVTASSSDVSVSIHNPILPSAAPKILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKKGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGPVTGLAFDPNGEYLASLDSNGTVIIWELHSGKNLHNLKGIAPDTGLDVSTMNVLCWSPDGETLAIPGLRNDVVMYDRDTAEKLFSLRGDHNQPICFLCWSPNGKYMATSGLDKQILIWDVDRKQDIDRQKFDEMVCCMAWKPIGNALSVIDVMGKYGIWDNVIPSSMKSPTEDIPMQGKNSKGLLFYDEEDQNNSFSESLSDLGENSNGEFEPPTSRKRLRKHSLSEENFDEDGEDGIDLYPKIESHKKRNRSVKENLDNGNVGFRSTMLPKAKMQEAFQPGATPVQPGKRRFLCYNMLGSITTVDHDGYSHIEIDFHDTGSSPRVPSMTDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFSSWASNSEWSMRFEGEEVKVVALGASWVAAVTSFNYLRIFTEGGMQRHVISLDGPVVTASGFKDKLAVVTHASDRLSSNDQVLEFKLFNITHGTQPLCGRLPITPGSSLSWFGFSEEGQLCSYDSKGVLRLYTSQFGGSWFPVLSAFKEKTDENYWMVGLNTNKLVCVVCKKPEFHPQVVPKPILTLMNLAFPLATSDLGSEALENEFMMNSMHLFEIQKKMEEMDNAGLDASLLDDDAFNLEAAQDRCILRLIASCCNSDKLVRATELVKLLSLEKSMKGAIKLVTALKLPNLAEKFNGILEERLYNEVKKTKETNLKENSFAPVTSDTLPSGSKVETSKASIISSSPNLSAPLFTKKNKTQEAAKDGMNKTATVDGSMNAKQIGGDETSDKEKNEVQAPPHPHSSSIKLTNKHGANKSEPSLVTPTRPSNPFLKSAIK 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02112 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Trre12g02112 945 MobiDBLite consensus disorder prediction 352 369 - -
Trre12g02112 945 SMART WD40_4 219 259 IPR001680 GO:0005515
Trre12g02112 945 SMART WD40_4 44 83 IPR001680 GO:0005515
Trre12g02112 945 SMART WD40_4 86 125 IPR001680 GO:0005515
Trre12g02112 945 SMART WD40_4 128 167 IPR001680 GO:0005515
Trre12g02112 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 135 172 - -
Trre12g02112 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 261 - -
Trre12g02112 945 MobiDBLite consensus disorder prediction 335 351 - -
Trre12g02112 945 Pfam WD domain, G-beta repeat 50 82 IPR001680 GO:0005515
Trre12g02112 945 Pfam WD domain, G-beta repeat 133 166 IPR001680 GO:0005515
Trre12g02112 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 135 176 IPR001680 GO:0005515
Trre12g02112 945 MobiDBLite consensus disorder prediction 335 378 - -
Trre12g02112 945 Pfam Anaphase-promoting complex subunit 4 WD40 domain 194 281 IPR024977 -
Trre12g02112 945 ProSitePatterns Trp-Asp (WD) repeats signature. 154 168 IPR019775 -
Trre12g02112 945 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 918 - -
Trre12g02112 945 MobiDBLite consensus disorder prediction 906 938 - -
Trre12g02112 945 CDD WD40 15 287 - -
Trre12g02112 945 Gene3D - 2 186 IPR015943 GO:0005515
Trre12g02112 945 MobiDBLite consensus disorder prediction 867 945 - -
Trre12g02112 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 51 83 - -
Trre12g02112 945 FunFam Transducin family protein / WD-40 repeat family protein 188 315 - -
Trre12g02112 945 ProSitePatterns Trp-Asp (WD) repeats signature. 246 260 IPR019775 -
Trre12g02112 945 SUPERFAMILY WD40 repeat-like 13 300 IPR036322 GO:0005515
Trre12g02112 945 Gene3D - 187 314 IPR015943 GO:0005515
Trre12g02112 945 Pfam Minichromosome loss protein, Mcl1, middle region 418 699 IPR022100 -
Trre12g02112 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 51 92 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02112 Trre-Chr12 22634004 22640042 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02112 52 262 U-box Gene Family AT2G33340 21.028 6.73e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02112 K11274 - gmx:100818807 1455.27