Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02111 ATGAAGGTCCGGTCAGTGAAAATGAGGGAGGCTCACACTCAAAAGGGCGGCCGTCCTTCTTTCTGCTCAGTCGTATGGGACCAGCAAGCTCAACATCTTGTAACTGCTTCTTCTTCCGATGTGTCCGTCTCGATTCATAACCCTATTCTTCCCTCCGCCGCCCCTAAAATCCTCCGTCACCACCGTGACGGTGTTACTGCTTTGGCTCTTAGCCCTAATTCCACTTGTCTTGCTTCTGGATCTGTTGATCATTCTGTTAAACTCTACAAATTTCCAGGTGGAGAGTTTGAGACAAATATAACGAGGTTCACACTTCCGATACGTTCCCTAGCATTTAACAAGAAAGGAAGCATGTTAGCAGCTGCAGGTGATGACGAGGGAATCAAGCTTATAAACACAGTTGATGGCTCCATTGCGAGGGTTCTGAAAGGGCATAAAGGGCCGGTCACTGGCTTAGCTTTTGACCCTAATGGTGAATACTTAGCATCTCTGGACTCAAATGGAACCGTTATCATATGGGAACTGCACTCGGGGAAAAACCTTCACAACCTCAAAGGCATTGCTCCTGACACTGGGTTAGATGTTTCAACCATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACTTTAGCCATTCCCGGATTGAGAAATGATGTCGTGATGTATGATAGGGACACGGCTGAGAAATTGTTCTCTCTGAGAGGGGATCATAACCAGCCTATATGTTTTTTGTGCTGGTCACCCAATGGCAAGTACATGGCTACTTCGGGTTTAGATAAACAGATTCTGATATGGGATGTTGATAGGAAGCAGGATATTGACAGACAGAAGTTTGATGAAATGGTGTGTTGCATGGCATGGAAGCCAATTGGGAATGCCTTGTCTGTTATTGATGTTATGGGAAAATATGGCATATGGGACAATGTTATTCCTTCGTCTATGAAGTCCCCGACTGAGGATATACCTATGCAGGGCAAGAACAGTAAAGGGCTTCTTTTTTATGACGAGGAAGATCAGAACAATAGTTTTAGTGAGAGCTTGAGTGATCTTGGTGAAAATAGTAATGGAGAGTTTGAGCCACCAACTAGCAGGAAAAGATTGCGCAAACATTCCTTGAGCGAGGAAAATTTTGATGAGGATGGAGAAGATGGAATTGATCTATATCCAAAAATCGAGTCTCACAAGAAAAGGAATCGGTCAGTCAAGGAAAATTTGGATAATGGCAATGTGGGATTCAGAAGCACAATGTTACCTAAGGCAAAAATGCAGGAGGCATTTCAACCAGGAGCCACTCCAGTGCAGCCCGGAAAAAGGCGCTTCTTATGCTACAATATGCTTGGAAGTATAACCACTGTCGATCACGATGGGTACTCTCATATTGAGATTGATTTTCATGATACTGGAAGTAGTCCTCGAGTTCCATCAATGACTGACCATTTTGGATTTACAATGGCTGCATTGAATGAGAATGGAAGCGTCTTTGCAAATCCTTGCAAGGGGGAGAAGAACATGAGCACACTCATGTATCGCCCATTTAGTAGCTGGGCTAGTAATAGTGAGTGGTCTATGCGCTTTGAAGGCGAAGAAGTAAAGGTTGTTGCACTTGGTGCTTCCTGGGTGGCTGCAGTAACTAGTTTTAATTATCTTCGAATCTTTACTGAGGGTGGTATGCAGAGACATGTTATTTCGCTAGATGGGCCAGTGGTGACTGCATCGGGTTTCAAGGATAAGCTTGCAGTTGTCACTCATGCTTCTGATCGCCTTTCCTCAAACGATCAGGTGTTAGAGTTTAAGTTATTTAATATAACACATGGGACCCAACCCCTTTGCGGTCGCTTGCCAATAACTCCTGGTTCCTCTCTAAGTTGGTTTGGGTTTAGTGAAGAGGGCCAATTGTGTTCTTATGATTCCAAGGGTGTGCTAAGATTATATACAAGCCAATTTGGTGGTAGCTGGTTCCCAGTCTTAAGTGCTTTTAAAGAGAAGACAGATGAAAACTATTGGATGGTGGGTTTGAATACAAACAAGTTAGTTTGTGTAGTATGCAAAAAGCCTGAGTTTCACCCACAGGTGGTGCCTAAACCAATTCTCACTTTAATGAATCTTGCGTTTCCACTCGCTACCTCTGATTTGGGATCTGAAGCACTTGAAAACGAGTTTATGATGAACAGCATGCATCTCTTTGAGATTCAGAAAAAAATGGAAGAAATGGATAATGCTGGTTTGGATGCTAGCTTACTTGATGATGATGCTTTCAATTTGGAAGCAGCACAAGATAGATGCATACTAAGACTTATAGCATCCTGCTGCAATAGTGATAAACTTGTGAGAGCTACTGAACTTGTGAAGCTTTTGTCACTGGAGAAATCAATGAAAGGTGCAATAAAACTTGTTACTGCTTTGAAGCTTCCAAATTTGGCCGAAAAATTCAATGGCATATTGGAGGAAAGGCTATATAATGAAGTTAAAAAGACCAAGGAGACCAACCTCAAGGAAAACAGTTTTGCACCAGTTACATCAGATACTCTACCTAGCGGTAGCAAGGTCGAAACATCGAAAGCATCTATCATTTCATCATCACCAAATTTATCTGCGCCGTTGTTCACAAAGAAAAATAAAACACAAGAGGCAGCTAAAGATGGAATGAATAAAACTGCAACGGTGGATGGAAGTATGAATGCAAAGCAGATAGGAGGGGATGAAACAAGTGACAAGGAAAAGAATGAAGTGCAAGCTCCTCCACATCCACATAGTTCGTCGATAAAGTTGACAAATAAGCATGGAGCTAACAAATCAGAGCCTAGTTTGGTGACACCAACAAGACCATCCAATCCATTTTTGAAGTCTGCAATAAAATGA 2859 0.4257 MKVRSVKMREAHTQKGGRPSFCSVVWDQQAQHLVTASSSDVSVSIHNPILPSAAPKILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKKGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGPVTGLAFDPNGEYLASLDSNGTVIIWELHSGKNLHNLKGIAPDTGLDVSTMNVLCWSPDGETLAIPGLRNDVVMYDRDTAEKLFSLRGDHNQPICFLCWSPNGKYMATSGLDKQILIWDVDRKQDIDRQKFDEMVCCMAWKPIGNALSVIDVMGKYGIWDNVIPSSMKSPTEDIPMQGKNSKGLLFYDEEDQNNSFSESLSDLGENSNGEFEPPTSRKRLRKHSLSEENFDEDGEDGIDLYPKIESHKKRNRSVKENLDNGNVGFRSTMLPKAKMQEAFQPGATPVQPGKRRFLCYNMLGSITTVDHDGYSHIEIDFHDTGSSPRVPSMTDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFSSWASNSEWSMRFEGEEVKVVALGASWVAAVTSFNYLRIFTEGGMQRHVISLDGPVVTASGFKDKLAVVTHASDRLSSNDQVLEFKLFNITHGTQPLCGRLPITPGSSLSWFGFSEEGQLCSYDSKGVLRLYTSQFGGSWFPVLSAFKEKTDENYWMVGLNTNKLVCVVCKKPEFHPQVVPKPILTLMNLAFPLATSDLGSEALENEFMMNSMHLFEIQKKMEEMDNAGLDASLLDDDAFNLEAAQDRCILRLIASCCNSDKLVRATELVKLLSLEKSMKGAIKLVTALKLPNLAEKFNGILEERLYNEVKKTKETNLKENSFAPVTSDTLPSGSKVETSKASIISSSPNLSAPLFTKKNKTQEAAKDGMNKTATVDGSMNAKQIGGDETSDKEKNEVQAPPHPHSSSIKLTNKHGANKSEPSLVTPTRPSNPFLKSAIK 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02111 952 MobiDBLite consensus disorder prediction 874 952 - -
Trre12g02111 952 Pfam WD domain, G-beta repeat 57 89 IPR001680 GO:0005515
Trre12g02111 952 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Trre12g02111 952 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Trre12g02111 952 MobiDBLite consensus disorder prediction 342 385 - -
Trre12g02111 952 SUPERFAMILY WD40 repeat-like 15 307 IPR036322 GO:0005515
Trre12g02111 952 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Trre12g02111 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Trre12g02111 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Trre12g02111 952 Pfam Anaphase-promoting complex subunit 4 WD40 domain 201 288 IPR024977 -
Trre12g02111 952 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Trre12g02111 952 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Trre12g02111 952 Pfam Minichromosome loss protein, Mcl1, middle region 425 706 IPR022100 -
Trre12g02111 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Trre12g02111 952 SMART WD40_4 135 174 IPR001680 GO:0005515
Trre12g02111 952 SMART WD40_4 93 132 IPR001680 GO:0005515
Trre12g02111 952 SMART WD40_4 226 266 IPR001680 GO:0005515
Trre12g02111 952 SMART WD40_4 2 47 IPR001680 GO:0005515
Trre12g02111 952 SMART WD40_4 51 90 IPR001680 GO:0005515
Trre12g02111 952 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Trre12g02111 952 Gene3D - 195 322 IPR015943 GO:0005515
Trre12g02111 952 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 925 - -
Trre12g02111 952 MobiDBLite consensus disorder prediction 359 376 - -
Trre12g02111 952 FunFam Transducin family protein / WD-40 repeat family protein 195 322 - -
Trre12g02111 952 MobiDBLite consensus disorder prediction 913 945 - -
Trre12g02111 952 CDD WD40 22 294 - -
Trre12g02111 952 MobiDBLite consensus disorder prediction 342 358 - -
Trre12g02111 952 Gene3D - 2 194 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02111 Trre-Chr12 22634004 22640063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02111 64 269 U-box Gene Family AT1G04510 22.010 6.74e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02111 K11274 - gmx:100818807 1466.44