Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02103 ATGAAGGATCCAGAGGAGCATCAAGTCAAATCAAGGCCTCTACAAAAACTTACAGAGCAAAGAAGATGGAGCAAAAAAAGAAGAAGCCAAATCAAGACAGAAAAATCACAAGAAGCAGGACATGATTCAAAACTGGTGCCCTATCCAACTTGCAAGAAGAGTCTTGTGTTTTCTAGCAGGCCTGGCTATGGCCAACTAGGGACAAAGTGTATCATCAAAGCCAACCACTTCCTTGTAGATATATCAATCTCTGATTTAAGCCATTATAATGTTAAAATAATACCTGAAGTCAGTTCTAGTAAAACAAGAAAAGCTGTCATATCTGAGCTTGTGAGGCTTCATAGGAACACTGATTTGGCCAAGAGGCTTCCTGCTTATGATGGAGGAAGAAATCTTTACACTGCTGGTTTGCTACCTTTTACATATAAAGAATTTAGTGTAATATTGAGTGAAGATGATTACGTTACCGGCGGCATTAGGGAACGAGAATTTAAGGTAGCAATCAAGTTTGCAAGTAGTGTCAAAATGCAACAACTTAAGGAACTTCTAAGTGGGAAAAAAGTAGACACACCACAAGAAGCACTTACTGTCTTTGACATTGTGTTGAAGGAAGTTGCTGCTCAAAGTTACATATCAATTGGAAGATGTCTCTATTCTCCTGATGTGAGAAAACCACAGCAACTTGGTGGTGGCATTGAATCATGGCGTGGATTTTATCAGAGTATAAGGCCAACTCAAATGGGATTATCACTTAACATTGATATGTCATCAATGGCATTTATTGAACCACTTCCTGTGATTGACTTTGTTGCTCAAATTCTTGGAAAAGAAGTGGAAAAGAAGGAACGAGAATTTAAGGTAGCAATCAAGTTTGCAAGTAGTGTCAAAATGCAACAACTTAAGGAACTTCTAAGTGGGAAAAAAGTAGACACACCACAAGAAGCACTTACTGTCTTTGACATTGTGTTGAAGGAAGTTGCTGCTCAAAGTTACATATCAATTGGAAGATGTCTCTATTCTCCTGATGTGAGAAAACCACAGCAACTTGGTGGTGGCATTGAATCATGGCGTGGATTTTATCAGAGTATAAGGCCAACTCAAATGGGATTATCACTTAACATTGATATGTCATCAATGGCATTTATTGAACCACTTCCTGTGATTGACTTTGTTGCTCAAATTCTTGGAAAAGAAGTGCAATCAAAACCATTGTCAGATGCAGATCGTGTCAAGGTTAAAAAGGCCCTAAGAGGTGTAAAAGTTGAAGTCACACATAGAGGAAATTTTAGAAGGAAGTACAGAATATCAGGATTGACTTTACAACCAACAAGGGAGCTTATTTTTCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTCGATTATTTTCGAGATATGTATAATTATACAATCAAATATACTCATTTACCTTGCCTTCAAGTAGGAAGTCAAAGGAAAGTCAACTATTTGCCTATGGAGGCATGTAAGATAGTTAGGGGCCAGAGATATACAAAAGGGCTGAATGAAAAGCAAATAACTTCACTGCTGAAGTCCTCATGCCAGAGACCCCGTGATCAAGAGACAGACATTTTACAGACAATTGAAAAAAACAATTACGAGAACAATCCCTATGCAAAGGAGTTTGGCATCAGCATAGACAACAAGCTTGCATCAGTGGAGGCTCGGGTTCTACCTCCTCCATGGTTGAAATATCATGATACTGGGAGAGAGAAAGAATACTTACCACAAGTTGGTCAATGGAATATGATGAACAAGAAAGTTATAAATGGAAGTACGGTAAAATATTGGGCATGCATCAATTTCTCACGAAGTGTACAAGAAAGTACAGCTCGTGGATTTTGCCAACAGTTAATTCAGATGTGTCAAATCTCAGGCATGGAATTTAGTCAGGAACCTGTCATTCCCGTATATTCAGCAAGACCGGATCAAGTCAAGAAAGCTTTGAAGTATGTACAGAAAACTGCTCTAGACAAACTTGGTGGTAAAGAGTTAGAATTCTTGATTGCCATTCTTCCAGACAACAATGGCTCTTTGTACGGTGATCTCAAAAGAATCTGCGAAACGGATCTAGGGTTGATTTCTCAATGCTGCCTTGCAAAATATGTAATCAAGATTAACAGACAGTACCTGGCAAATGTTGCACTAAAAATCAATGTGAAGATGGGAGGAAGAAACACGGTACTTTTGGATGCATTAAGTTGGAAGATTCCACTGGTTAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACTCATGCAGAATCTGGAGACGAAAGTTGCCCATCCATTGCTGCTGTTGTAGCTTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGGTTAGTTTGCGCTCAGCCTCACCGTGAAGAGCTCATCCAAGATCTTTTCAAATGTTGGAAAGATCCACAGATGGGTGTGGTTTATGGTGGTATGATTAGGGAGCTTTTACTCTCATTTAAGAAGGCAACTGGACAAAAACCGTCGAGAATAATTTTTTATAGGGACGGGGTAAGTGATGGACAATTCTACCAAGTTTTGCTGTATGAACTTGACGCAATCCGTAAGGCGTGTGCGTCTTTGGAACCAAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGGAATCACACTAGACTCTTCCCAAACAATCATGACGACAAAAACAGCACTGATATGAGTGGGAATATCTTACCTGGTACTGTGGTGGACTCGAATATCTGCCATCCTACTGAATTCGATTTCTATTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCGGCACACTATCATGTCCTCTGGGATGAGAACAATTTCAGTGCAGATGAGATTCAGTCTCTAACTAACAACTTATGTTACACCTATGCAAGATGTACGCGGTCTGTTTCTGTAGTACCTCCAGCATACTATGCTCATCTGGCAGCCTACAGAGCTCGATGCTACATGGAACCTGATCATCCAGAGATCGCTAAACTCCGAGGTACAAGATCAAAAGATAGGTCTGTTAAGCCACTTCCTGCATTGAAAGAGAACGTGAAGAAAGTAATGTTTTATTGCTGA 3093 0.3973 MKDPEEHQVKSRPLQKLTEQRRWSKKRRSQIKTEKSQEAGHDSKLVPYPTCKKSLVFSSRPGYGQLGTKCIIKANHFLVDISISDLSHYNVKIIPEVSSSKTRKAVISELVRLHRNTDLAKRLPAYDGGRNLYTAGLLPFTYKEFSVILSEDDYVTGGIREREFKVAIKFASSVKMQQLKELLSGKKVDTPQEALTVFDIVLKEVAAQSYISIGRCLYSPDVRKPQQLGGGIESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKEVEKKEREFKVAIKFASSVKMQQLKELLSGKKVDTPQEALTVFDIVLKEVAAQSYISIGRCLYSPDVRKPQQLGGGIESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKEVQSKPLSDADRVKVKKALRGVKVEVTHRGNFRRKYRISGLTLQPTRELIFPLDEQMNMKSVVDYFRDMYNYTIKYTHLPCLQVGSQRKVNYLPMEACKIVRGQRYTKGLNEKQITSLLKSSCQRPRDQETDILQTIEKNNYENNPYAKEFGISIDNKLASVEARVLPPPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVKYWACINFSRSVQESTARGFCQQLIQMCQISGMEFSQEPVIPVYSARPDQVKKALKYVQKTALDKLGGKELEFLIAILPDNNGSLYGDLKRICETDLGLISQCCLAKYVIKINRQYLANVALKINVKMGGRNTVLLDALSWKIPLVSDIPTIIFGADVTHAESGDESCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPQMGVVYGGMIRELLLSFKKATGQKPSRIIFYRDGVSDGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRNHTRLFPNNHDDKNSTDMSGNILPGTVVDSNICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARCYMEPDHPEIAKLRGTRSKDRSVKPLPALKENVKKVMFYC 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02103 1030 MobiDBLite consensus disorder prediction 1 20 - -
Trre12g02103 1030 Pfam Piwi domain 674 993 IPR003165 GO:0003676
Trre12g02103 1030 Pfam Argonaute linker 1 domain 212 261 IPR014811 -
Trre12g02103 1030 Pfam Argonaute linker 1 domain 333 382 IPR014811 -
Trre12g02103 1030 Pfam Argonaute linker 2 domain 528 571 IPR032472 -
Trre12g02103 1030 ProSiteProfiles PAZ domain profile. 385 499 IPR003100 GO:0005515
Trre12g02103 1030 Pfam PAZ domain 389 515 IPR003100 GO:0005515
Trre12g02103 1030 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 277 995 - -
Trre12g02103 1030 SUPERFAMILY Ribonuclease H-like 661 995 IPR012337 -
Trre12g02103 1030 SMART DUF1785_2 211 263 IPR014811 -
Trre12g02103 1030 SMART DUF1785_2 332 384 IPR014811 -
Trre12g02103 1030 SMART Piwi_a_2 673 994 IPR003165 GO:0003676
Trre12g02103 1030 Pfam Mid domain of argonaute 582 660 IPR032473 -
Trre12g02103 1030 Gene3D paz domain 379 503 - -
Trre12g02103 1030 ProSiteProfiles Piwi domain profile. 673 994 IPR003165 GO:0003676
Trre12g02103 1030 FunFam Argonaute 10 563 736 - -
Trre12g02103 1030 FunFam Protein argonaute-2 378 504 - -
Trre12g02103 1030 SMART PAZ_2_a_3 389 521 IPR003100 GO:0005515
Trre12g02103 1030 CDD Piwi_ago-like 543 993 IPR045246 -
Trre12g02103 1030 SUPERFAMILY PAZ domain 380 539 IPR036085 GO:0005515
Trre12g02103 1030 Gene3D - 563 736 - -
Trre12g02103 1030 CDD PAZ_argonaute_like 384 498 - -
Trre12g02103 1030 SUPERFAMILY PAZ domain 71 275 IPR036085 GO:0005515
Trre12g02103 1030 Pfam N-terminal domain of argonaute 69 202 IPR032474 -
Trre12g02103 1030 Pfam N-terminal domain of argonaute 279 323 IPR032474 -
Trre12g02103 1030 MobiDBLite consensus disorder prediction 1 45 - -
Trre12g02103 1030 Gene3D - 742 1030 IPR036397 GO:0003676
Trre12g02103 1030 FunFam protein argonaute 10-like 742 1030 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02103 Trre-Chr12 22511100 22519025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02103 52 281 Eukaryotic Initiation Factors Gene Family AT5G43810 60.345 4.50e-87 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02103 K11593 - gmx:100810235 1368.6