Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02102 ATGCAATTACAAATGAAGGATCCAGAGGAGCATCAAGTCAAATCAAGGCCTCTACAAAAACTTACAGAGCAAAGAAGATGGAGCAAAAAAAGAAGAAGCCAAATCAAGACAGAAAAATCACAAGAAGCAGGACATGATTCAAAACTGGTGCCCTATCCAACTTGCAAGAAGAGTCTTGTGTTTTCTAGCAGGCCTGGCTATGGCCAACTAGGGACAAAGTGTATCATCAAAGCCAACCACTTCCTTGTAGATATATCAATCTCTGATTTAAGCCATTATAATGTTAAAATAATACCTGAAGTCAGTTCTAGTAAAACAAGAAAAGCTGTCATATCTGAGCTTGTGAGGCTTCATAGGAACACTGATTTGGCCAAGAGGCTTCCTGCTTATGATGGAGGAAGAAATCTTTACACTGCTGGTTTGCTACCTTTTACATATAAAGAATTTAGTGTAATATTGAGTGAAGATGATTACGTTACCGGCGGCATTAGGGAACGAGAATTTAAGGTAGCAATCAAGTTTGCAAGTAGTGTCAAAATGCAACAACTTAAGGAACTTCTAAGTGGGAAAAAAGTAGACACACCACAAGAAGCACTTACTGTCTTTGACATTGTGTTGAAGGAAGTTGCTGCTCAAAGTTACATATCAATTGGAAGATGTCTCTATTCTCCTGATGTGAGAAAACCACAGCAACTTGGTGGTGGCATTGAATCATGGCGTGGATTTTATCAGAGTATAAGGCCAACTCAAATGGGATTATCACTTAACATTGATATGTCATCAATGGCATTTATTGAACCACTTCCTGTGATTGACTTTGTTGCTCAAATTCTTGGAAAAGAAGTGGAAAAGAAGGAACGAGAATTTAAGGTAGCAATCAAGTTTGCAAGTAGTGTCAAAATGCAACAACTTAAGGAACTTCTAAGTGGGAAAAAAGTAGACACACCACAAGAAGCACTTACTGTCTTTGACATTGTGTTGAAGGAAGTTGCTGCTCAAAGTTACATATCAATTGGAAGATGTCTCTATTCTCCTGATGTGAGAAAACCACAGCAACTTGGTGGTGGCATTGAATCATGGCGTGGATTTTATCAGAGTATAAGGCCAACTCAAATGGGATTATCACTTAACATTGATATGTCATCAATGGCATTTATTGAACCACTTCCTGTGATTGACTTTGTTGCTCAAATTCTTGGAAAAGAAGTGCAATCAAAACCATTGTCAGATGCAGATCGTGTCAAGGTTAAAAAGGCCCTAAGAGGTGTAAAAGTTGAAGTCACACATAGAGGAAATTTTAGAAGGAAGTACAGAATATCAGGATTGACTTTACAACCAACAAGGGAGCTTATTTTTCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTCGATTATTTTCGAGATATGTATAATTATACAATCAAATATACTCATTTACCTTGCCTTCAAGTAGGAAGTCAAAGGAAAGTCAACTATTTGCCTATGGAGGCATGTAAGATAGTTAGGGGCCAGAGATATACAAAAGGGCTGAATGAAAAGCAAATAACTTCACTGCTGAAGTCCTCATGCCAGAGACCCCGTGATCAAGAGACAGACATTTTACAGACAATTGAAAAAAACAATTACGAGAACAATCCCTATGCAAAGGAGTTTGGCATCAGCATAGACAACAAGCTTGCATCAGTGGAGGCTCGGGTTCTACCTCCTCCATGGTTGAAATATCATGATACTGGGAGAGAGAAAGAATACTTACCACAAGTTGGTCAATGGAATATGATGAACAAGAAAGTTATAAATGGAAGTACGGTAAAATATTGGGCATGCATCAATTTCTCACGAAGTGTACAAGAAAGTACAGCTCGTGGATTTTGCCAACAGTTAATTCAGATGTGTCAAATCTCAGGCATGGAATTTAGTCAGGAACCTGTCATTCCCGTATATTCAGCAAGACCGGATCAAGTCAAGAAAGCTTTGAAGTATGTACAGAAAACTGCTCTAGACAAACTTGGTGGTAAAGAGTTAGAATTCTTGATTGCCATTCTTCCAGACAACAATGGCTCTTTGTACGGTGATCTCAAAAGAATCTGCGAAACGGATCTAGGGTTGATTTCTCAATGCTGCCTTGCAAAATATGTAATCAAGATTAACAGACAGTACCTGGCAAATGTTGCACTAAAAATCAATGTGAAGATGGGAGGAAGAAACACGGTACTTTTGGATGCATTAAGTTGGAAGATTCCACTGGTTAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACTCATGCAGAATCTGGAGACGAAAGTTGCCCATCCATTGCTGCTGTTGTAGCTTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGGTTAGTTTGCGCTCAGCCTCACCGTGAAGAGCTCATCCAAGATCTTTTCAAATGTTGGAAAGATCCACAGATGGGTGTGGTTTATGGTGGTATGATTAGGGAGCTTTTACTCTCATTTAAGAAGGCAACTGGACAAAAACCGTCGAGAATAATTTTTTATAGGGACGGGGTAAGTGATGGACAATTCTACCAAGTTTTGCTGTATGAACTTGACGCAATCCGTAAGGCGTGTGCGTCTTTGGAACCAAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGGAATCACACTAGACTCTTCCCAAACAATCATGACGACAAAAACAGCACTGATATGAGTGGGAATATCTTACCTGGTACTGTGGTGGACTCGAATATCTGCCATCCTACTGAATTCGATTTCTATTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCGGCACACTATCATGTCCTCTGGGATGAGAACAATTTCAGTGCAGATGAGATTCAGTCTCTAACTAACAACTTATGTTACACCTATGCAAGATGTACGCGGTCTGTTTCTGTAGTACCTCCAGCATACTATGCTCATCTGGCAGCCTACAGAGCTCGATGCTACATGGAACCTGATCATCCAGAGATCGCTAAACTCCGAGGTACAAGATCAAAAGATAGGTCTGTTAAGCCACTTCCTGCATTGAAAGAGAACGTGAAGAAAGTAATGTTTTATTGCTGA 3105 0.3968 MQLQMKDPEEHQVKSRPLQKLTEQRRWSKKRRSQIKTEKSQEAGHDSKLVPYPTCKKSLVFSSRPGYGQLGTKCIIKANHFLVDISISDLSHYNVKIIPEVSSSKTRKAVISELVRLHRNTDLAKRLPAYDGGRNLYTAGLLPFTYKEFSVILSEDDYVTGGIREREFKVAIKFASSVKMQQLKELLSGKKVDTPQEALTVFDIVLKEVAAQSYISIGRCLYSPDVRKPQQLGGGIESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKEVEKKEREFKVAIKFASSVKMQQLKELLSGKKVDTPQEALTVFDIVLKEVAAQSYISIGRCLYSPDVRKPQQLGGGIESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKEVQSKPLSDADRVKVKKALRGVKVEVTHRGNFRRKYRISGLTLQPTRELIFPLDEQMNMKSVVDYFRDMYNYTIKYTHLPCLQVGSQRKVNYLPMEACKIVRGQRYTKGLNEKQITSLLKSSCQRPRDQETDILQTIEKNNYENNPYAKEFGISIDNKLASVEARVLPPPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVKYWACINFSRSVQESTARGFCQQLIQMCQISGMEFSQEPVIPVYSARPDQVKKALKYVQKTALDKLGGKELEFLIAILPDNNGSLYGDLKRICETDLGLISQCCLAKYVIKINRQYLANVALKINVKMGGRNTVLLDALSWKIPLVSDIPTIIFGADVTHAESGDESCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPQMGVVYGGMIRELLLSFKKATGQKPSRIIFYRDGVSDGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRNHTRLFPNNHDDKNSTDMSGNILPGTVVDSNICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARCYMEPDHPEIAKLRGTRSKDRSVKPLPALKENVKKVMFYC 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02102 1034 SUPERFAMILY PAZ domain 384 543 IPR036085 GO:0005515
Trre12g02102 1034 SMART Piwi_a_2 677 998 IPR003165 GO:0003676
Trre12g02102 1034 MobiDBLite consensus disorder prediction 1 49 - -
Trre12g02102 1034 CDD Piwi_ago-like 547 997 IPR045246 -
Trre12g02102 1034 Gene3D - 567 740 - -
Trre12g02102 1034 Pfam Argonaute linker 1 domain 216 265 IPR014811 -
Trre12g02102 1034 Pfam Argonaute linker 1 domain 337 386 IPR014811 -
Trre12g02102 1034 MobiDBLite consensus disorder prediction 7 24 - -
Trre12g02102 1034 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 281 999 - -
Trre12g02102 1034 FunFam Argonaute 10 567 740 - -
Trre12g02102 1034 SUPERFAMILY PAZ domain 75 279 IPR036085 GO:0005515
Trre12g02102 1034 Pfam Mid domain of argonaute 586 664 IPR032473 -
Trre12g02102 1034 SUPERFAMILY Ribonuclease H-like 665 999 IPR012337 -
Trre12g02102 1034 CDD PAZ_argonaute_like 388 502 - -
Trre12g02102 1034 FunFam protein argonaute 10-like 746 1034 - -
Trre12g02102 1034 Pfam Argonaute linker 2 domain 532 575 IPR032472 -
Trre12g02102 1034 ProSiteProfiles PAZ domain profile. 389 503 IPR003100 GO:0005515
Trre12g02102 1034 FunFam Protein argonaute-2 382 508 - -
Trre12g02102 1034 Pfam PAZ domain 393 519 IPR003100 GO:0005515
Trre12g02102 1034 Pfam Piwi domain 678 997 IPR003165 GO:0003676
Trre12g02102 1034 ProSiteProfiles Piwi domain profile. 677 998 IPR003165 GO:0003676
Trre12g02102 1034 Gene3D - 746 1034 IPR036397 GO:0003676
Trre12g02102 1034 Pfam N-terminal domain of argonaute 283 327 IPR032474 -
Trre12g02102 1034 Pfam N-terminal domain of argonaute 73 206 IPR032474 -
Trre12g02102 1034 SMART PAZ_2_a_3 393 525 IPR003100 GO:0005515
Trre12g02102 1034 Gene3D paz domain 383 507 - -
Trre12g02102 1034 SMART DUF1785_2 336 388 IPR014811 -
Trre12g02102 1034 SMART DUF1785_2 215 267 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02102 Trre-Chr12 22511100 22519037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02102 56 285 Eukaryotic Initiation Factors Gene Family AT5G43810 60.345 3.42e-87 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02102 K11593 - gmx:100810235 1368.6