Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02092 ATGGAGTTTTGGGGTGCTGAAGTTAAGGTTGGAGAAACCCTTAAGGTTGACCCAAATGAATTTGAGACATGCATTCATCTTTCACAGGCTGCATTAGGTGAATCAAAGAAAGACAAAGAAAATGATTCTGTTGTTCTTTTTGTGAAAGTTGGTGAACAGAAGCTAGTTTTGGGAACCCTTCTTAAGGACAAAATCCCTCAGATATCTCTTGAATTGGTTTTGGATAAGGAGTTTGAGCTTTCTCATAATTCCAAAACTGCTAGTGTCCATTTCTTTGGATACAGAGCTCTTTTCCCTGGCGATTATGATAGCGACAGTAGTGAGTATGAATGTACTGATAATGATGAAGATGATGATAAAATCGGAAGCTCCAATGATGAGAAGAGGGAGAAGGGAAAGAAGAGGCCCAATGAATCTGTTTCTAAAACTCCAGTTCCTTCAAAGAAATCAAAAAATGCCACTCCTGAAAAGACTGATGGTAAGAAATCTGGACATACAGCAACTCCTCACCCTAAGAAGGGAGGAAAGACTCCCAACACAGATGCCAAAAGTCCCAAGTCTGGAGGACAACTCTCCTGCGGTAGTTGCAGCAAGACTTTCAGCTCCTACACAGGACTGGAACAACACAGCAAAGCCAAGCATGGTGCTCAAATCGCAACTGGGGAGGGGTGTGGAGGAGAGGATAACAAGGGTGTGTCTTTCAAACATGCTTTAACCGGTTTGAAGGATGAAGAACTACAAAGGAAGAATATAAACGACGACAACAACAACAACAACAACAACAACAACAACAACAATAACAACAACAAGATGGAAGGGGTCTTGGAGGTGAAGGCGGTGAGGAGTAATCTTGAAGCATTGAGCCACAGTTACTTGGCCAGATTCTTGGGAGTTGATCTAATACTCTTATCAAGTCTAAAATCTGACGGAGTTATGCGTGCGGTAGAACTGAATCAGAGATGGTGGGAAAGATGGTTTTCAGAAATCAAGCCTTGGAATCCTCTACAGAAACCCAGAGGTCGAAGAATTTTTGGAGCTCCAATTCATGCTTGGGGATGGGATTGCTTTGAACGAATCACTTGGAGATGCAACCTCTCTCCCTCTGCTCGGCCGCACCACCTCTCTCTCTCTCTCTCTCTCTCTTCCCACGACAGACAGGTTACTTTGCCTAGTACTCAAGGATACTTTGCCGATACTCAAGGATACCGACCACCATCCAACCACCGCAATCATCCTAGTACTTCACAAGGTTACTTTGCCGATACACAAGGATACCGACCAGATTTAAGTCATCTATCAAGGAATAATATTGATTTGAATCAAGACAAGTGGCAGTGGCGGAAGAGGAGCTAG 1353 0.4346 MEFWGAEVKVGETLKVDPNEFETCIHLSQAALGESKKDKENDSVVLFVKVGEQKLVLGTLLKDKIPQISLELVLDKEFELSHNSKTASVHFFGYRALFPGDYDSDSSEYECTDNDEDDDKIGSSNDEKREKGKKRPNESVSKTPVPSKKSKNATPEKTDGKKSGHTATPHPKKGGKTPNTDAKSPKSGGQLSCGSCSKTFSSYTGLEQHSKAKHGAQIATGEGCGGEDNKGVSFKHALTGLKDEELQRKNINDDNNNNNNNNNNNNNNNKMEGVLEVKAVRSNLEALSHSYLARFLGVDLILLSSLKSDGVMRAVELNQRWWERWFSEIKPWNPLQKPRGRRIFGAPIHAWGWDCFERITWRCNLSPSARPHHLSLSLSLSSHDRQVTLPSTQGYFADTQGYRPPSNHRNHPSTSQGYFADTQGYRPDLSHLSRNNIDLNQDKWQWRKRS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02092 450 MobiDBLite consensus disorder prediction 396 420 - -
Trre12g02092 450 MobiDBLite consensus disorder prediction 240 270 - -
Trre12g02092 450 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Trre12g02092 450 Gene3D Nucleoplasmin core domain 1 97 - -
Trre12g02092 450 MobiDBLite consensus disorder prediction 252 270 - -
Trre12g02092 450 ProSitePatterns Zinc finger C2H2 type domain signature. 193 214 IPR013087 -
Trre12g02092 450 MobiDBLite consensus disorder prediction 106 120 - -
Trre12g02092 450 MobiDBLite consensus disorder prediction 152 166 - -
Trre12g02092 450 MobiDBLite consensus disorder prediction 121 138 - -
Trre12g02092 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 219 IPR013087 -
Trre12g02092 450 FunFam Histone deacetylase HDT1 1 99 - -
Trre12g02092 450 MobiDBLite consensus disorder prediction 105 193 - -
Trre12g02092 450 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02092 Trre-Chr12 22403762 22415790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02092 1 209 C2H2 Transcription Factor Family AT3G44750 39.919 1.84e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g02092 NPL 1.9e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02092 - - cpap:110815564 226.868