Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02073 ATGACTAATCCAACACTAGCAGATTTATCCAGGGACAATAATAGTAACAATGTGGGTCCCACTCCATCCCAGATCAATTTTAGTAGTCACAACAATGGACCCCACTCAAATCACCATGGACTTGGCATACTTCAATGGGGACAAAGTAGTAATTTTAATGATCACTTTTCCACTCCACTTTCCCAACAAAATCAACATGGTGTATTTCATGATGCTAATGCATTATCACAACAAAATCACCAACAAAGACAAGGTGGTAATAATGATCCATTTCATTATAATCTAATATCACCAGAAGATAATCAACAAGGGCAAGTTGGTAATAGTGATCCATTTCAATACAATCTAATATCACCAGAAAATAATCAACAAGGGCAAGGTGGTAATAATGATCCATTATTTACCAATGAAATGTCACAACATGGTGGTAATAGTCAAAGTTTTCCTCAACCAATGGTTCAAGAACAATATGTTGAAAACAACAATAATAATAATTTTTCACTTGGAGGAAACAATTTTGAAGTGGGTGGTACATCATCACAAATGCATGAGAATCAACAACAAAATCTACTACCTTCAATTCAAATTCCTGTTTTGCCAAACCATGATCAAGTGCTAGCAATTGATCAATGGCCACCCACACAACTCCCATTTTTTTGCTCTTGTTGTCAAGTTCTTAGAGAAATCATTCATTCTAATGGTTTTCAATTTGAAAAGTTTGAGATTCATGGAAGAGTAGGGTTGATTACACATGGAATTCATCATCATTTACCTGTTAATGGGAACACTTCAAGTTATCAAATGATTGATTTTTCCAAGAGTAGTCTTGATGAAATAAAGAAATATTTGGAGAAATACTGCGTGGATCGTAATACATTCGGATACTCTACTCTGCAAGATCCAATGTCTGCATTTTATGAAACTCTTTGTACTGGATTGGATTGGATTGATGATATTAATATGGAAGGTCCTCTTTATAATAATCAAAATAATACAGATGAGATAGGTGAAGGTGAGAATGGAACGTCAGAAAAAAAGGACCTCTCATCACAGAGGAAAAAATCTGCAAGCATGACATTGCATGATTTACGCGATTACTTTCATCTACCGATTGAGGAAGCATCAGATCATCCGAATGTGAAGTTATGTCCATCAGTTCTGAAGAAAACATGTCGTAAAGCCGGATTACAAAGATGGCCTCATAGAAAGGTGAAAAGTCTTTTGAAGCAGATTGCATTAATGGAATCACAATTGGATGGACAAGATCCCGCGAGAAGGGCAAGGACTGAAGAAGAAATTGAAAGGCTTAAACAAGAAATGATTACACATTGTGGCGGTATCATACCAACCGCGATGAATAACATAGCCACCTTCTTGCCGCCGCAGTATCAGCAGCAGCAGTAG 1404 0.3654 MTNPTLADLSRDNNSNNVGPTPSQINFSSHNNGPHSNHHGLGILQWGQSSNFNDHFSTPLSQQNQHGVFHDANALSQQNHQQRQGGNNDPFHYNLISPEDNQQGQVGNSDPFQYNLISPENNQQGQGGNNDPLFTNEMSQHGGNSQSFPQPMVQEQYVENNNNNNFSLGGNNFEVGGTSSQMHENQQQNLLPSIQIPVLPNHDQVLAIDQWPPTQLPFFCSCCQVLREIIHSNGFQFEKFEIHGRVGLITHGIHHHLPVNGNTSSYQMIDFSKSSLDEIKKYLEKYCVDRNTFGYSTLQDPMSAFYETLCTGLDWIDDINMEGPLYNNQNNTDEIGEGENGTSEKKDLSSQRKKSASMTLHDLRDYFHLPIEEASDHPNVKLCPSVLKKTCRKAGLQRWPHRKVKSLLKQIALMESQLDGQDPARRARTEEEIERLKQEMITHCGGIIPTAMNNIATFLPPQYQQQQ 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02073 467 Pfam RWP-RK domain 357 407 IPR003035 -
Trre12g02073 467 ProSiteProfiles RWP-RK domain profile. 340 427 IPR003035 -
Trre12g02073 467 MobiDBLite consensus disorder prediction 338 356 - -
Trre12g02073 467 MobiDBLite consensus disorder prediction 77 149 - -
Trre12g02073 467 PANTHER PROTEIN RKD4 197 440 IPR044607 GO:0003700
Trre12g02073 467 MobiDBLite consensus disorder prediction 1 46 - -
Trre12g02073 467 MobiDBLite consensus disorder prediction 327 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02073 Trre-Chr12 22051923 22053900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02073 318 441 AtRKD Transcription Factor Family AT5G66990 31.298 1.70e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre12g02073 RWP-RK 3.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02073 - - tpra:123895752 672.93