Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02072 ATGGAAGAAATGTTTTATTTTGATGATGAAAATTCCATTGACCCAAATTTTTTCAATATGACTAATCCAACACTAGCAGATTTATCCAGGGACAATAATAGTAACAATGTGGGTCCCACTCCATCCCAGATCAATTTTAGTAGTCACAACAATGGACCCCACTCAAATCACCATGGACTTGGCATACTTCAATGGGGACAAAGTAGTAATTTTAATGATCACTTTTCCACTCCACTTTCCCAACAAAATCAACATGGTGTATTTCATGATGCTAATGCATTATCACAACAAAATCACCAACAAAGACAAGGTGGTAATAATGATCCATTTCATTATAATCTAATATCACCAGAAGATAATCAACAAGGGCAAGTTGGTAATAGTGATCCATTTCAATACAATCTAATATCACCAGAAAATAATCAACAAGGGCAAGGTGGTAATAATGATCCATTATTTACCAATGAAATGTCACAACATGGTGGTAATAGTCAAAGTTTTCCTCAACCAATGGTTCAAGAACAATATGTTGAAAACAACAATAATAATAATTTTTCACTTGGAGGAAACAATTTTGAAGTGGGTGGTACATCATCACAAATGCATGAGAATCAACAACAAAATCTACTACCTTCAATTCAAATTCCTGTTTTGCCAAACCATGATCAAGTGCTAGCAATTGATCAATGGCCACCCACACAACTCCCATTTTTTTGCTCTTGTTGTCAAGTTCTTAGAGAAATCATTCATTCTAATGGTTTTCAATTTGAAAAGTTTGAGATTCATGGAAGAGTAGGGTTGATTACACATGGAATTCATCATCATTTACCTGTTAATGGGAACACTTCAAGTTATCAAATGATTGATTTTTCCAAGAGTAGTCTTGATGAAATAAAGAAATATTTGGAGAAATACTGCGTGGATCGTAATACATTCGGATACTCTACTCTGCAAGATCCAATGTCTGCATTTTATGAAACTCTTTGTACTGGATTGGATTGGATTGATGATATTAATATGGAAGGTCCTCTTTATAATAATCAAAATAATACAGATGAGATAGGTGAAGGTGAGAATGGAACGTCAGAAAAAAAGGACCTCTCATCACAGAGGAAAAAATCTGCAAGCATGACATTGCATGATTTACGCGATTACTTTCATCTACCGATTGAGGAAGCATCAGATCATCCGAATGTGAAGTTATGTCCATCAGTTCTGAAGAAAACATGTCGTAAAGCCGGATTACAAAGATGGCCTCATAGAAAGGTGAAAAGTCTTTTGAAGCAGATTGCATTAATGGAATCACAATTGGATGGACAAGATCCCGCGAGAAGGGCAAGGACTGAAGAAGAAATTGAAAGGCTTAAACAAGAAATGATTACACATTGTGGCGGTATCATACCAACCGCGATGAATAACATAGCCACCTTCTTGCCGCCGCAGTATCAGCAGCAGCAGTAG 1461 0.3607 MEEMFYFDDENSIDPNFFNMTNPTLADLSRDNNSNNVGPTPSQINFSSHNNGPHSNHHGLGILQWGQSSNFNDHFSTPLSQQNQHGVFHDANALSQQNHQQRQGGNNDPFHYNLISPEDNQQGQVGNSDPFQYNLISPENNQQGQGGNNDPLFTNEMSQHGGNSQSFPQPMVQEQYVENNNNNNFSLGGNNFEVGGTSSQMHENQQQNLLPSIQIPVLPNHDQVLAIDQWPPTQLPFFCSCCQVLREIIHSNGFQFEKFEIHGRVGLITHGIHHHLPVNGNTSSYQMIDFSKSSLDEIKKYLEKYCVDRNTFGYSTLQDPMSAFYETLCTGLDWIDDINMEGPLYNNQNNTDEIGEGENGTSEKKDLSSQRKKSASMTLHDLRDYFHLPIEEASDHPNVKLCPSVLKKTCRKAGLQRWPHRKVKSLLKQIALMESQLDGQDPARRARTEEEIERLKQEMITHCGGIIPTAMNNIATFLPPQYQQQQ 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02072 486 ProSiteProfiles RWP-RK domain profile. 359 446 IPR003035 -
Trre12g02072 486 MobiDBLite consensus disorder prediction 346 375 - -
Trre12g02072 486 PANTHER PROTEIN RKD4 217 459 IPR044607 GO:0003700
Trre12g02072 486 MobiDBLite consensus disorder prediction 96 165 - -
Trre12g02072 486 MobiDBLite consensus disorder prediction 28 65 - -
Trre12g02072 486 Pfam RWP-RK domain 376 426 IPR003035 -
Trre12g02072 486 MobiDBLite consensus disorder prediction 357 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02072 Trre-Chr12 22051866 22053900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02072 337 460 AtRKD Transcription Factor Family AT5G66990 31.298 1.68e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre12g02072 RWP-RK 3.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02072 - - tpra:123895752 703.36