Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02067 ATGGATTCATGGAGTTTTGTTCCTGAAGATAATAAAGGGTATGTTTCTAAAGGTTCAATCTTGGGTTGGGAACTTAAAACCCCATCTAGTTTTTTAGGTCAACAAAACATTGAAAATGACAATAATCAATGTTTTGAGGAATTGGGTTTTCATGGTATGTTGGGAAAACAATTGTCTAATGTTGTTGTTGTTGATGATGTTGTTGATGATGTTGTTAATGATGATGTTGTTGATGATGTTGTTGTTGATGATGTTCATAGAAGAAAAATGGATAATGATGTTGTTATGGCTGCACCAAGAAGAGAATTTTCAAACTCATTAGGATGTAATTCACTCATTGATTTAAAGCTTGGTAGATTTGGTGATCATAAAGATGCAATTGGAAATGCATTTTCAAAAGGGACGGCGATTTTATCGTCGTCCGGTTCATCGTCAACACCGCCTAAGAGAGTGCGGTCTTCGAGCATTCATTCTCAAATTGCTTATTGCCAAGTCTATGGTTGTAATAAGGATCTGAGTGGTTGTAAAGATTATCACAAGAGACACAAAGTTTGTGAGATTCATTCAAAGACTTCTAAAGTTATAGTCAATGGTATTGAACAAAGATTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAACGCCGCAGAAAGCCACAAGTCGGTATTCACTCGGGAAGAGCTGGGAGATTGCTTCAGTCATATAGCGATAACAGATTCCAGGGAAGCATGCTAACATCAGCATCTTTTATATGCCAAGATATACTCCCCAGTGAGGTTTTGTCTTCTGAGAAATGTGGAACTAGTAACTGGTGGAGGCCTATAAAAGGCGAAGACGGAACTGGAACCGGTTTTCGGCCTCTTTCTTCTATTCCAATTACCAATGCACATCCTCATTCCCGAACTCTATTTCCTTCTTACAGTGATAAACAATTTCCGTTCCTTCATGAAAACGGAGCTGCACCTGCTACAGGAAGCATGTTCTGCGAAAACAATACTCAATATCCTCCTATCCTTGGAGGCTCGACTTCCGGATCACAATCATTATTCCAAGATACTTCCTTAGGAAGCGAGGACTTCAACGTTTTTGAAACGGAATCAACTGTTCAAGGATTATCGGGAGTTTCAGACGGTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAATTCTTCAAGCCAATCATCAGCAATCCCATTGCATCGTTCTTTGGTCATTCCAAACAGCCATTACAGCATAAGTGGAGTGTCGGATAGGTTTCCGTCTGAGTTAAATCCTACAGATGGAAGTCATCTTAGTCCTATATTGATATCCGACAATAATGAAATCGTACATTTCGAAATGGCAGATGGGATTTTCCAAGGGTCTGATTTTGTCAATGTGAAAGATCGTCTTTCTTGTGAAGATGGCACGACCATTGACTTGCTTCAATTGTCAACACAACTTCAGCGTGTCGAACATCAGAGACGAGCCTTGCAGGTTAAGCAAGAAAACGATTCTTCTTTCTCTCTTCGGATTACTTAA 1581 0.3985 MDSWSFVPEDNKGYVSKGSILGWELKTPSSFLGQQNIENDNNQCFEELGFHGMLGKQLSNVVVVDDVVDDVVNDDVVDDVVVDDVHRRKMDNDVVMAAPRREFSNSLGCNSLIDLKLGRFGDHKDAIGNAFSKGTAILSSSGSSSTPPKRVRSSSIHSQIAYCQVYGCNKDLSGCKDYHKRHKVCEIHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQSYSDNRFQGSMLTSASFICQDILPSEVLSSEKCGTSNWWRPIKGEDGTGTGFRPLSSIPITNAHPHSRTLFPSYSDKQFPFLHENGAAPATGSMFCENNTQYPPILGGSTSGSQSLFQDTSLGSEDFNVFETESTVQGLSGVSDGGCALSLLSSQSQNSSSQSSAIPLHRSLVIPNSHYSISGVSDRFPSELNPTDGSHLSPILISDNNEIVHFEMADGIFQGSDFVNVKDRLSCEDGTTIDLLQLSTQLQRVEHQRRALQVKQENDSSFSLRIT 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02067 526 Pfam SBP domain 163 236 IPR004333 GO:0003677
Trre12g02067 526 Gene3D - 154 224 IPR036893 GO:0003677|GO:0005634
Trre12g02067 526 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 82 509 IPR044817 GO:0003677
Trre12g02067 526 SUPERFAMILY SBT domain 161 241 IPR036893 GO:0003677|GO:0005634
Trre12g02067 526 Coils Coil 494 514 - -
Trre12g02067 526 FunFam Squamosa promoter-binding-like protein 14 154 224 - -
Trre12g02067 526 ProSiteProfiles Zinc finger SBP-type profile. 160 237 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02067 Trre-Chr12 21961313 21964420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02067 113 516 SBP-box Gene Family AT1G69170 35.610 6.95e-52 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre12g02067 SBP 5.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02067 - - gmx:100777766 689.108