Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02060 ATGTTTTTTCACCTAAACACTTATTCAACTCATTTCAGCACTATTTCTCATCACACCACATCTCATTACAGAAAACAAATTTCACTCGCTAATCTCTTCCAAACCTATGGTTTCCCTTCTTCAACCCTTCACAATTTCCTCTCCAAAAATCACTTCCTCTTCAATTCCGATCCAACCGAGCTTCACAAATCGATAACAACCCTCTTTTCCTTCCTAATTCCGCAGAAAACCTTAATTTCCCTTGTTCATGATTGTCCTTCTGTGTTGGAACCTCAATTTCTACATAATTGGGAATTAGGTTTTCCTCAATTGAAATCCAAAGTTTGTAATCCTTCCCCGTTGATGATTGCTAATTTGTTGCGATGTTCTAGACGGTTCCATTTAAATCCCCTTGAAATTTCCGAAAAAGTTGAGGTTTTTAGGGGTTTAGGGTTTTCTGAGGATGTTGTGGTTAGGGTTTTGGAAGAATTTCCCAGTGCGGTTGTAATGAGCAAAAGTGAAATTGTTGGTGTGATTGATTTTCTTGTGGAATTTGGTGTTTCTAGAGATGAAATTGATAGAGTTGTTAGATTGTATCCTAGTGTTTTGGGATTTGGAGTTGAAAATAGGTTGAAGCCGTTGATTCATGAGTTTAGGAGTTTGGGGTTTTCACGACGCGAAGTTAGGGCGGAGGTTGTTAGGGATCCAAGGATTCTGGGAATGGAAATTGGGGAATTTTCGCGGTGTTTGAAGTTGTTGCAGAGTTTGAAATGCAGGGAGGCAATTAAAGAGAAGATTTTTAGAGATGGTCTGGTTAGGGCTTGTTTTGAAGTGAAGCTGAGGGTCGATTGTTTATGCAGTCATGGTTTGATTCGTAGGGATGCTTTGAAGGTATTGTGGAAGGAACCGAGGTTGATGACTTATGATTTGGATGATATTGAGAAGAAGATTGAGTTTTTAGTTCATAGGATGAAATATGGTATTGATTGTTTGCATGAAGTTCCTGAATACTTGGGTGTGAATTTTGAAAAGCAGATTGTTCCTAGATACAATGTGATCGAATATTTGAATGGAAAGGGTGCAATTGGGTTTGAAGTTGGATTGAAGGACCTTATCAAACCAACTAGGCTTAGATTTTATAATCTTTATGTCAAGCCTTATCCTGAATGCGAAAAAATATACGGCAGATTTTCATGTAAGGTTGAAATCAAAAGAAAGCATCCAGCTGGACTTTGGAAGCTGTTCAAACCACAAAAGTTTACTCAAACCGATAAAGATGTAAAGAACATGAAGGCTTTCATGGATTCGTAG 1290 0.3806 MFFHLNTYSTHFSTISHHTTSHYRKQISLANLFQTYGFPSSTLHNFLSKNHFLFNSDPTELHKSITTLFSFLIPQKTLISLVHDCPSVLEPQFLHNWELGFPQLKSKVCNPSPLMIANLLRCSRRFHLNPLEISEKVEVFRGLGFSEDVVVRVLEEFPSAVVMSKSEIVGVIDFLVEFGVSRDEIDRVVRLYPSVLGFGVENRLKPLIHEFRSLGFSRREVRAEVVRDPRILGMEIGEFSRCLKLLQSLKCREAIKEKIFRDGLVRACFEVKLRVDCLCSHGLIRRDALKVLWKEPRLMTYDLDDIEKKIEFLVHRMKYGIDCLHEVPEYLGVNFEKQIVPRYNVIEYLNGKGAIGFEVGLKDLIKPTRLRFYNLYVKPYPECEKIYGRFSCKVEIKRKHPAGLWKLFKPQKFTQTDKDVKNMKAFMDS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02060 429 Gene3D Transcription termination factor 3, mitochondrial 165 390 IPR038538 -
Trre12g02060 429 FunFam Transcription termination factor MTERF15 mitochondrial 165 387 - -
Trre12g02060 429 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Trre12g02060 429 SMART mt_12 151 181 IPR003690 GO:0003690|GO:0006355
Trre12g02060 429 SMART mt_12 289 320 IPR003690 GO:0003690|GO:0006355
Trre12g02060 429 SMART mt_12 222 252 IPR003690 GO:0003690|GO:0006355
Trre12g02060 429 SMART mt_12 116 146 IPR003690 GO:0003690|GO:0006355
Trre12g02060 429 SMART mt_12 321 352 IPR003690 GO:0003690|GO:0006355
Trre12g02060 429 Pfam mTERF 48 241 IPR003690 GO:0003690|GO:0006355
Trre12g02060 429 Pfam mTERF 274 367 IPR003690 GO:0003690|GO:0006355
Trre12g02060 429 PANTHER CGI-12 PROTEIN-RELATED 33 380 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02060 Trre-Chr12 21887408 21888697 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre12g02060 mTERF 9.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02060 - - pcin:129319850 566.614