Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02055 ATGATAGGAAGCCAAGCAACGGAGCAAGGAGATTGCTCAAAATTCAAATCATTTAATCCACTTCCACATTCTTGCAAGAAGGACCCAACAATAGTTGATCTATTGTCAGGAGCACATTACAACCAGCAGATTCCGCACTGTTGCAGAGGTGGAGTCTTGAGTTCATTGGCTCAAGATCCAACCAGTGAATTATACCCGTGGGCTGCAAAGATTGTTAGACCAACTAAATATTTGAGCAGTGGTAAGAGAAGAACCACACAAGCTTTTATGACCTGGGACATTACCTATACTTACTCTCAATTCTTGGCTCAATGGACGCCAACTTGTTGTGTTTCACTCTCATCCTTCTATAATGACACACATCCTAATTTTGATGATGTTACTCAGCTTTTCAACTTCATGTACAAGCCTCTAATGCCCTATGAGGGCTTAAATGATACAGGTGTATTGTGGGGAATAAAATACTTCAATGACATTCTTTCTTTAGCTGGACCATATGGGCATGTGCAGTCGGAAATTTTGTTCAGAAAAAATAAATCGACTTTTACATTGGATCAGGGATGGGGGTTTCCAAGAAGGATATATTTCAACGGTGATTATTGCGTTATGCCTCCTCCCGATGTATATCCTTGGTTACCAAGTGCATCGTCAAAACTTTCTTTCTCTGAAGCAATATGGATCAGTGCCATTTTTATTGTTATTGTTATGCCATGTACTGAGATGTTGAATTAG 732 0.3975 MIGSQATEQGDCSKFKSFNPLPHSCKKDPTIVDLLSGAHYNQQIPHCCRGGVLSSLAQDPTSELYPWAAKIVRPTKYLSSGKRRTTQAFMTWDITYTYSQFLAQWTPTCCVSLSSFYNDTHPNFDDVTQLFNFMYKPLMPYEGLNDTGVLWGIKYFNDILSLAGPYGHVQSEILFRKNKSTFTLDQGWGFPRRIYFNGDYCVMPPPDVYPWLPSASSKLSFSEAIWISAIFIVIVMPCTEMLN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02055 243 PANTHER PROTEIN COBRA 1 63 IPR006918 GO:0010215|GO:0016020
Trre12g02055 243 Pfam COBRA-like protein 1 62 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02055 Trre-Chr12 21843927 21845665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02055 121 222 COBRA Gene Family AT5G60920 67.647 2.35e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02055 - - vun:114177145 183.726