Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02049 ATGGAAAACCACCAAAACCAAACCAAAAACCCAGAGCAAGACCTAGACAACAAACAACAACACCAGGAGGGTTGGGGCACGTGGGAAGAACTTTTACTAGCGTGCGCCGTCAACCGCCATGGCTTCAAAGATTGGGACACCGTCGCCATGGAGGTTCAGTCCCGAACCAACCGCCCTACGCTCCTCGCCACCGCATACCACTGCGAACAAAAATTTCACGATCTAAACCGTCGATTCACTGATGATGTTCCTCCGCCGCAACAGAATGGAGACTCCGCTGACGTTGATTCCGATCATGTTCCCTGGCTTGGGAAATTGCGTAAACAACGCGTTGTGGAGCTCCGGCGTGATGTCCAACGCAGCGATGCCTCCATTTTGTCGTTGCAGTTGCAGGTGAAGAAATTAGAGGAAGAGAAAGCGAAAGAGAATGACGGAGAAGAAGATAAGAAACCAGATCTGGCGGTTACCGGCGAGGAACAGTTACCGGGAACTGAAAAAACCGGTGGAGAAATGGAGAAGGCTGAACCGGATATACGACGGCTCGATGAAAGCACAACTAATACTGATAAACTGTTACCAACAACTGGAGAGGAATCGGACCGGGATAATCAATCGGTTAATGAGTCGAACTCAACCGGTTCGAGGTTCGATTTAGCGAAAACCGGTGATCCTGATGTAAAGTTAAGCACCGGTCCGGTTCATGTTAAATCCGGTCCAAACGAGCCGGTTCAAACCGGGAGGAAGAAAAAATCGATTGAGGAAGAATCGAATAACGGAAGCTATGATAACGAGGCTAAAGTTTTAACGTGTGAGTCGGTGCCTCCGAGTGAGGAGAGGAAGGTGGAAGGTGACTCATCCGAGTTACATGACTCGGTGACTCGCTCGGAGGAGACAGGGACGAGAGAGAGTAGCGAAGTGCAGAGTTCTTCGAGTTTGTCGAAAACGAGGAGGACACGGCGGAGGAAGGATGTTTCCGGTGGAGATGTGACGCCGGGGAATGAGGACATGGCGATGGTGAAATCAGAACCGTTGGTTGGCGTGTTGGAGATGATCAAAAGACATGAAAAATTTTCATTGTTTGAACGGCGTCTTGAAAAAAGCCAGGATTTGGATAGATACAAAGACATTGTGAGACAGCACGTGGACTTGGAAACCATACAATTGAGACTCCAAAAAGGTCACTATTCCTCGTGCACTAGCTCATTCTTCCGCGATCTCCTCCTCCTCTTCACCAATGCCTCTGTGATCTTCCCTCGCGATTCATCCGAATCACGGGCGGCGCATCAGCTGCAACACCTGGTTATTGCCGAGATGAAAAGCTCCAGCCAAACACAATCCGACCCTATCACTCAGAAGACCGATTCACTCCCTCCAAAAGCTGCTCCTATATTAGTTTGCCGTAAACGCAGTGGAAGCTCAACTAAGCCTTCTGCAACCACCTTGAGTCAAAAGGGTGATCACCAACCCATCATCAATGTCAAGAAGGAAAGGCAATCTTCTGATGCTAAACCAACCTTGAAACCAAGTAATTCTGAGACAGATGATGAGGAGCCTCCTTTGGCTAGAGAAAAGCCTGTAACTGGAGTTAGAAGCAGAAGAAGCAACAAAAACCTCAACAACAATGCCGACAACAAGAAACTACCCTCTAACTCCACTTCTAAAACAGTTTCCTCGGCAACCAAGCCTGCTGAGACCCCAAAATTAGAGAAGAACAAAGCAGAAGGGGTGCCCGACAAGAAGAAGAATGCTGCTGCCGATTTCTTGAAGAGAATAAAGCGAAATGCCTCTGTGGAGGTGCTGAGAAGCAGTGGTGGTGGTGGAGGTAGTAGTGGTAGCAGTAAGGGTGGTGGAGGTAGTGCTAATACGAAAGAGCAGAAGAAAGTAGTGAATAATGGAAAGAGTGAGAAAGGGAAAGAAAGAGCTTCGAGGTATAACGATGGAGGAGGGTCAGGAGATAAGAGGAATAAGAATATTGATAACTCTAGGAGGAATGTTGGAAGACCTCCAAAGAAAGGAGCAGAGACCAATGTAGTTAGTACAAAGCGTGGAAGGGAAAGTAGCGCAAGTGGTAGCAAAGATAAGCGACCGAAAAAACGTTCAAAGAAATGA 2109 0.4794 MENHQNQTKNPEQDLDNKQQHQEGWGTWEELLLACAVNRHGFKDWDTVAMEVQSRTNRPTLLATAYHCEQKFHDLNRRFTDDVPPPQQNGDSADVDSDHVPWLGKLRKQRVVELRRDVQRSDASILSLQLQVKKLEEEKAKENDGEEDKKPDLAVTGEEQLPGTEKTGGEMEKAEPDIRRLDESTTNTDKLLPTTGEESDRDNQSVNESNSTGSRFDLAKTGDPDVKLSTGPVHVKSGPNEPVQTGRKKKSIEEESNNGSYDNEAKVLTCESVPPSEERKVEGDSSELHDSVTRSEETGTRESSEVQSSSSLSKTRRTRRRKDVSGGDVTPGNEDMAMVKSEPLVGVLEMIKRHEKFSLFERRLEKSQDLDRYKDIVRQHVDLETIQLRLQKGHYSSCTSSFFRDLLLLFTNASVIFPRDSSESRAAHQLQHLVIAEMKSSSQTQSDPITQKTDSLPPKAAPILVCRKRSGSSTKPSATTLSQKGDHQPIINVKKERQSSDAKPTLKPSNSETDDEEPPLAREKPVTGVRSRRSNKNLNNNADNKKLPSNSTSKTVSSATKPAETPKLEKNKAEGVPDKKKNAAADFLKRIKRNASVEVLRSSGGGGGSSGSSKGGGGSANTKEQKKVVNNGKSEKGKERASRYNDGGGSGDKRNKNIDNSRRNVGRPPKKGAETNVVSTKRGRESSASGSKDKRPKKRSKK 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02049 702 MobiDBLite consensus disorder prediction 531 564 - -
Trre12g02049 702 MobiDBLite consensus disorder prediction 438 702 - -
Trre12g02049 702 MobiDBLite consensus disorder prediction 628 669 - -
Trre12g02049 702 MobiDBLite consensus disorder prediction 137 155 - -
Trre12g02049 702 MobiDBLite consensus disorder prediction 246 260 - -
Trre12g02049 702 MobiDBLite consensus disorder prediction 273 301 - -
Trre12g02049 702 Gene3D - 333 449 IPR036427 GO:0005515
Trre12g02049 702 MobiDBLite consensus disorder prediction 165 186 - -
Trre12g02049 702 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 11 702 - -
Trre12g02049 702 MobiDBLite consensus disorder prediction 1 19 - -
Trre12g02049 702 SUPERFAMILY Bromodomain 344 444 IPR036427 GO:0005515
Trre12g02049 702 MobiDBLite consensus disorder prediction 603 627 - -
Trre12g02049 702 MobiDBLite consensus disorder prediction 137 336 - -
Trre12g02049 702 Coils Coil 118 145 - -
Trre12g02049 702 ProSiteProfiles Bromodomain profile. 352 424 IPR001487 GO:0005515
Trre12g02049 702 MobiDBLite consensus disorder prediction 565 596 - -
Trre12g02049 702 CDD SANT 25 56 IPR001005 -
Trre12g02049 702 MobiDBLite consensus disorder prediction 438 453 - -
Trre12g02049 702 SMART sant 21 78 IPR001005 -
Trre12g02049 702 MobiDBLite consensus disorder prediction 1 21 - -
Trre12g02049 702 SMART bromo_6 337 443 IPR001487 GO:0005515
Trre12g02049 702 Pfam Myb-like DNA-binding domain 25 56 IPR001005 -
Trre12g02049 702 MobiDBLite consensus disorder prediction 470 487 - -
Trre12g02049 702 Gene3D - 15 73 - -
Trre12g02049 702 MobiDBLite consensus disorder prediction 79 98 - -
Trre12g02049 702 CDD Bromodomain 347 438 - -
Trre12g02049 702 MobiDBLite consensus disorder prediction 489 530 - -
Trre12g02049 702 Pfam Bromodomain 347 427 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02049 Trre-Chr12 21799889 21807947 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre12g02049 Bromodomain 3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02049 - - adu:107458545 808.905