Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02048 ATGGTTAATAAAAACCATCCTCTTATATTTTTTTTATTTTTCTCATATGATATGGAAAACCACCAAAACCAAACCAAAAACCCAGAGCAAGACCTAGACAACAAACAACAACACCAGGAGGGTTGGGGCACGTGGGAAGAACTTTTACTAGCGTGCGCCGTCAACCGCCATGGCTTCAAAGATTGGGACACCGTCGCCATGGAGGTTCAGTCCCGAACCAACCGCCCTACGCTCCTCGCCACCGCATACCACTGCGAACAAAAATTTCACGATCTAAACCGTCGATTCACTGATGATGTTCCTCCGCCGCAACAGAATGGAGACTCCGCTGACGTTGATTCCGATCATGTTCCCTGGCTTGGGAAATTGCGTAAACAACGCGTTGTGGAGCTCCGGCGTGATGTCCAACGCAGCGATGCCTCCATTTTGTCGTTGCAGTTGCAGGTGAAGAAATTAGAGGAAGAGAAAGCGAAAGAGAATGACGGAGAAGAAGATAAGAAACCAGATCTGGCGGTTACCGGCGAGGAACAGTTACCGGGAACTGAAAAAACCGGTGGAGAAATGGAGAAGGCTGAACCGGATATACGACGGCTCGATGAAAGCACAACTAATACTGATAAACTGTTACCAACAACTGGAGAGGAATCGGACCGGGATAATCAATCGGTTAATGAGTCGAACTCAACCGGTTCGAGGTTCGATTTAGCGAAAACCGGTGATCCTGATGTAAAGTTAAGCACCGGTCCGGTTCATGTTAAATCCGGTCCAAACGAGCCGGTTCAAACCGGGAGGAAGAAAAAATCGATTGAGGAAGAATCGAATAACGGAAGCTATGATAACGAGGCTAAAGTTTTAACGTGTGAGTCGGTGCCTCCGAGTGAGGAGAGGAAGGTGGAAGGTGACTCATCCGAGTTACATGACTCGGTGACTCGCTCGGAGGAGACAGGGACGAGAGAGAGTAGCGAAGTGCAGAGTTCTTCGAGTTTGTCGAAAACGAGGAGGACACGGCGGAGGAAGGATGTTTCCGGTGGAGATGTGACGCCGGGGAATGAGGACATGGCGATGGTGAAATCAGAACCGTTGGTTGGCGTGTTGGAGATGATCAAAAGACATGAAAAATTTTCATTGTTTGAACGGCGTCTTGAAAAAAGCCAGGATTTGGATAGATACAAAGACATTGTGAGACAGCACGTGGACTTGGAAACCATACAATTGAGACTCCAAAAAGGTCACTATTCCTCGTGCACTAGCTCATTCTTCCGCGATCTCCTCCTCCTCTTCACCAATGCCTCTGTGATCTTCCCTCGCGATTCATCCGAATCACGGGCGGCGCATCAGCTGCAACACCTGGTTATTGCCGAGATGAAAAGCTCCAGCCAAACACAATCCGACCCTATCACTCAGAAGACCGATTCACTCCCTCCAAAAGCTGCTCCTATATTAGTTTGCCGTAAACGCAGTGGAAGCTCAACTAAGCCTTCTGCAACCACCTTGAGTCAAAAGGGTGATCACCAACCCATCATCAATGTCAAGAAGGAAAGGCAATCTTCTGATGCTAAACCAACCTTGAAACCAAGTAATTCTGAGACAGATGATGAGGAGCCTCCTTTGGCTAGAGAAAAGCCTGTAACTGGAGTTAGAAGCAGAAGAAGCAACAAAAACCTCAACAACAATGCCGACAACAAGAAACTACCCTCTAACTCCACTTCTAAAACAGTTTCCTCGGCAACCAAGCCTGCTGAGACCCCAAAATTAGAGAAGAACAAAGCAGAAGGGGTGCCCGACAAGAAGAAGAATGCTGCTGCCGATTTCTTGAAGAGAATAAAGCGAAATGCCTCTGTGGAGGTGCTGAGAAGCAGTGGTGGTGGTGGAGGTAGTAGTGGTAGCAGTAAGGGTGGTGGAGGTAGTGCTAATACGAAAGAGCAGAAGAAAGTAGTGAATAATGGAAAGAGTGAGAAAGGGAAAGAAAGAGCTTCGAGGTATAACGATGGAGGAGGGTCAGGAGATAAGAGGAATAAGAATATTGATAACTCTAGGAGGAATGTTGGAAGACCTCCAAAGAAAGGAGCAGAGACCAATGTAGTTAGTACAAAGCGTGGAAGGGAAAGTAGCGCAAGTGGTAGCAAAGATAAGCGACCGAAAAAACGTTCAAAGAAATGA 2160 0.4727 MVNKNHPLIFFLFFSYDMENHQNQTKNPEQDLDNKQQHQEGWGTWEELLLACAVNRHGFKDWDTVAMEVQSRTNRPTLLATAYHCEQKFHDLNRRFTDDVPPPQQNGDSADVDSDHVPWLGKLRKQRVVELRRDVQRSDASILSLQLQVKKLEEEKAKENDGEEDKKPDLAVTGEEQLPGTEKTGGEMEKAEPDIRRLDESTTNTDKLLPTTGEESDRDNQSVNESNSTGSRFDLAKTGDPDVKLSTGPVHVKSGPNEPVQTGRKKKSIEEESNNGSYDNEAKVLTCESVPPSEERKVEGDSSELHDSVTRSEETGTRESSEVQSSSSLSKTRRTRRRKDVSGGDVTPGNEDMAMVKSEPLVGVLEMIKRHEKFSLFERRLEKSQDLDRYKDIVRQHVDLETIQLRLQKGHYSSCTSSFFRDLLLLFTNASVIFPRDSSESRAAHQLQHLVIAEMKSSSQTQSDPITQKTDSLPPKAAPILVCRKRSGSSTKPSATTLSQKGDHQPIINVKKERQSSDAKPTLKPSNSETDDEEPPLAREKPVTGVRSRRSNKNLNNNADNKKLPSNSTSKTVSSATKPAETPKLEKNKAEGVPDKKKNAAADFLKRIKRNASVEVLRSSGGGGGSSGSSKGGGGSANTKEQKKVVNNGKSEKGKERASRYNDGGGSGDKRNKNIDNSRRNVGRPPKKGAETNVVSTKRGRESSASGSKDKRPKKRSKK 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02048 719 Gene3D - 350 466 IPR036427 GO:0005515
Trre12g02048 719 Pfam Myb-like DNA-binding domain 42 73 IPR001005 -
Trre12g02048 719 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 28 719 - -
Trre12g02048 719 MobiDBLite consensus disorder prediction 154 353 - -
Trre12g02048 719 Coils Coil 135 162 - -
Trre12g02048 719 MobiDBLite consensus disorder prediction 487 504 - -
Trre12g02048 719 MobiDBLite consensus disorder prediction 506 547 - -
Trre12g02048 719 MobiDBLite consensus disorder prediction 548 581 - -
Trre12g02048 719 SUPERFAMILY Bromodomain 361 461 IPR036427 GO:0005515
Trre12g02048 719 MobiDBLite consensus disorder prediction 645 686 - -
Trre12g02048 719 CDD SANT 42 73 IPR001005 -
Trre12g02048 719 Gene3D - 32 90 - -
Trre12g02048 719 ProSiteProfiles Bromodomain profile. 369 441 IPR001487 GO:0005515
Trre12g02048 719 SMART sant 38 95 IPR001005 -
Trre12g02048 719 MobiDBLite consensus disorder prediction 182 203 - -
Trre12g02048 719 MobiDBLite consensus disorder prediction 94 116 - -
Trre12g02048 719 SMART bromo_6 354 460 IPR001487 GO:0005515
Trre12g02048 719 MobiDBLite consensus disorder prediction 455 719 - -
Trre12g02048 719 MobiDBLite consensus disorder prediction 620 644 - -
Trre12g02048 719 CDD Bromodomain 364 455 - -
Trre12g02048 719 MobiDBLite consensus disorder prediction 582 613 - -
Trre12g02048 719 Pfam Bromodomain 364 444 IPR001487 GO:0005515
Trre12g02048 719 MobiDBLite consensus disorder prediction 455 470 - -
Trre12g02048 719 MobiDBLite consensus disorder prediction 290 318 - -
Trre12g02048 719 MobiDBLite consensus disorder prediction 154 172 - -
Trre12g02048 719 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02048 Trre-Chr12 21799838 21807947 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre12g02048 Bromodomain 3.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02048 - - adu:107458545 815.068