Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02045 ATGATGAGGCTTTGTTTTTCATTTCTTTGTGTTCTTGTGCTATCCTCTTATGCTGTTGCTTATGATCCAAAGGATCCAAATGGAAACATAACAGTCAAATGGGATGTTATTTCATGGACATCAGATGGTTATGTGGCGTTAGTAACAATCAACAATTTCCAAAAGTTTCGACAAATAAAGAATCTGGGATGGACGTTAGGATGGTCTTGGGCTAAGAAAGAAATTATATGGGATATGCTAGGAGCTCAAAACAAGGAGACTGTTCTAGGTGGTGTGATTGCAGCTTGGGGACAATCAGTTTTTGAAGTTATTGTAGGAGAAGCTGGTACCTCAAACAAAACGGTTAGACTTCCGAAGAATTTCACTCTTTTGGCTCCAGGACCTGGATATATTTGTGGCCCTACAAAGATTGTTTCTTCCTCCATTTTTCTTTCTCATGATAGACGCCACAAGGCTCAAGCGTATATGACATGGGATGTTACCTGCAAATACTCACAAGGTTAA 504 0.3948 MMRLCFSFLCVLVLSSYAVAYDPKDPNGNITVKWDVISWTSDGYVALVTINNFQKFRQIKNLGWTLGWSWAKKEIIWDMLGAQNKETVLGGVIAAWGQSVFEVIVGEAGTSNKTVRLPKNFTLLAPGPGYICGPTKIVSSSIFLSHDRRHKAQAYMTWDVTCKYSQG 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02045 167 Pfam COBRA-like protein 44 86 IPR006918 GO:0010215|GO:0016020
Trre12g02045 167 Pfam COBRA-like protein 98 165 IPR006918 GO:0010215|GO:0016020
Trre12g02045 167 PANTHER PROTEIN COBRA 89 166 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02045 Trre-Chr12 21773307 21775008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02045 18 166 COBRA Gene Family AT5G15630 55.497 9.80e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02045 - - gmx:100783410 236.113