Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02033 ATGGAGCTTGGTTTAAGCTTAGGAGACTCTTCAAAGCCTCTAATTGGGTTAATGGAAAAACATCCTCATGAATCTTCCAAAGAACTTGGTTTAGGCTTCAACGCCACTTTATCAATTGGTCCAATAAACACTACACAAAGAGATCAGCTTCAACTAAAAGAAGAAGATGAAAAGACTAAAAGGGACATCATGAACAACAGAATTGAAAATCCTAACCCTGTATTGCATCAGCTTGATCTTCTTCCTCAACTCTCATTACCATGGCATCCTACTCCTTCTCAAAATGTTGGTAGATTATTATCAACTGAGTTTGGTGGTTCTTCAAGGTACTTGGATGTGAACGTGGTTCCACCGGCGACAGCGGTTGTTATAGCGGACGATGAGGCGGTGCTTTCTTCGTCGCCTAATAGCGCAGCATCTTCTTTTCCAATGGATCTCTGTATATACAATCGAGGAGGAAGTGGTGGCGGTGGTGGTGGAAGTTTGAGTGGATCAGGAGGGAACAAAAGAGAGTTTTCTGATGGTGAAGGTTATGATCAAAGAAACTCTTCAAGAGTTAGTGATGAAGATGATAACTGTGGTGGTGGAAACACAAGGAAGAAGCTTAGGCTCTCCAAGGATCAATCTGCTTTTCTTGAAGAGAGTTTCAAAGAACACCACACTCTTAATCCTAAACAAAAACTGGCTCTTGCAAAACAACTCAATCTTCGACCTCGCCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACTAAGTTGAAGCAAACAGAAGTGAATTGTGAATATTTAAAGAGATGTTGTGAGACACTAACAGAAGAGAATAGAAGACTACACAAGGAACTTTTAGAATTAAGAGCTTTAAAAACTTCAAATCCATTTCAAATGCAATTACCAGCAACTACTTTAACTATGTGTCCTTCATGTGAACGTGTAGCAACCAATTCTACAGCAACTTCTTCTGTCACTACAAATACCACAATCAATGCTAATAACAAAACAAGTGATGATTCCACTTCAAAGGTCAATATTGGATTCCCTTTTGGAAAACCAAGGTTTCAAACACAACATCATGAGTTGAATTGA 1086 0.3941 MELGLSLGDSSKPLIGLMEKHPHESSKELGLGFNATLSIGPINTTQRDQLQLKEEDEKTKRDIMNNRIENPNPVLHQLDLLPQLSLPWHPTPSQNVGRLLSTEFGGSSRYLDVNVVPPATAVVIADDEAVLSSSPNSAASSFPMDLCIYNRGGSGGGGGGSLSGSGGNKREFSDGEGYDQRNSSRVSDEDDNCGGGNTRKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVNCEYLKRCCETLTEENRRLHKELLELRALKTSNPFQMQLPATTLTMCPSCERVATNSTATSSVTTNTTINANNKTSDDSTSKVNIGFPFGKPRFQTQHHELN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02033 361 MobiDBLite consensus disorder prediction 157 200 - -
Trre12g02033 361 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 61 333 - -
Trre12g02033 361 Pfam Homeodomain 199 253 IPR001356 GO:0003677
Trre12g02033 361 Coils Coil 360 361 - -
Trre12g02033 361 CDD homeodomain 199 256 IPR001356 GO:0003677
Trre12g02033 361 SMART halz 255 298 IPR003106 GO:0006355|GO:0043565
Trre12g02033 361 MobiDBLite consensus disorder prediction 329 361 - -
Trre12g02033 361 ProSiteProfiles 'Homeobox' domain profile. 195 255 IPR001356 GO:0003677
Trre12g02033 361 MobiDBLite consensus disorder prediction 172 200 - -
Trre12g02033 361 Gene3D - 203 253 - -
Trre12g02033 361 Coils Coil 268 288 - -
Trre12g02033 361 Pfam Homeobox associated leucine zipper 255 289 IPR003106 GO:0006355|GO:0043565
Trre12g02033 361 SMART HOX_1 197 259 IPR001356 GO:0003677
Trre12g02033 361 SUPERFAMILY Homeodomain-like 187 256 IPR009057 -
Trre12g02033 361 ProSitePatterns 'Homeobox' domain signature. 230 253 IPR017970 GO:0000981|GO:0006355
Trre12g02033 361 FunFam Homeobox-leucine zipper protein 18 182 260 - -
Trre12g02033 361 Pfam HD-ZIP protein N terminus 28 141 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02033 Trre-Chr12 21659276 21662253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02033 69 318 Homeobox Transcription Factor Family AT5G47370 54.724 2.74e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre12g02033 HD-ZIP_N 5.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02033 K09338 - gmx:100805312 416.387