Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02027 ATGAGTTTGAGTGTTCCTAATCGTAATTTGTTTTTGAATATTGAAGAAATTAATTTTGATAGAACAAGTTGGAATATTAGGGCTAAGATTATAAGACTTTGGCAAGTGTCTGATTTTAACCGAACTAATGTTCCTTTTTCCCTTGAAATGGTATTAATGGATGCTGCTGGTGATAAGATTCATGCCACTATCAAGAAAACTCTGATTTACAAATTTAAAAATGATTTAATTGAAGGAAAAGTTTATTGTTTGGAAAACATGGGTGTCGCAACTAATTCTGGAGCTTATCATTCCACTCGCCACCCTTACAAGCTTAATTTTCAGTATAGCTCTTTGGTTCAAAGGCTTTCAAATTTTGAGATTCTGAAATCTCCATATAACTTTGTTCCAATTTCTGAAGTTGCGGGGGATTTGATTGGGTTGTTTACTGGTTATGGCCAAGAGCGTGAGGTAACTAATCAAAATGGAACCACAACCAAGCTGAATGTCATTGTTTTGGAAGCTGATGGGCATAAGCTTCAGTGTACTCTGTTTGGACCATATGTTAATGAACTGAATGCCTTTATTGCTGCTGGTGATCTTACTAATGCTGTGGTGATTTTTCAGCTTGCAAAAGCTAAAAGTTTCCAAGTAATTGATATGGAATTTCTAGGCAAGATGCATATTCAGAACTGCATGAATTGTTCTGTTTTGAAGTTTAACACAAGTTGTCCAGAAAGTCTTAACTTTAGAGAAAGTCTAACTGATGCTGTGGAGACACCTTCTCCATTGACCATGACTCAACTTTCTGTTGAATCAAGAGTTGAACCAGTTGATGATTTTTTGTACAACACTCTAAGAATGACCTTGCAAGCTCTCAAAGATGCTACAAATGAATCATTGAATGTTGTTCTTGCTACTATTAAGAGGATTTTAAATCCGGGTGCTTATTGGTACACTGCATGTGTATGTAGCAAGGCCGTCATACCAGATTCTAGGATGTTCTATTGTGAAAAATGTAACAAGCATGTTCATAGGATTGTTCCTAGGTTTTGTATCAAAGTGAGAGTAATGGATCATACTGAATCAACAAATTTTGTCATCTTTGATACTCAAGCAAGCTCCATATTCAATAGGTCTTGTGCTGATATGATTCAAGGAGCTGAACCTGTTAAAGCAAAACCTTCTCATAATCCAAAGTTTGAGCAATCTTTCCGTGTTAGGAAGATTTGCACGGATGATGCAATCATTAAGCAGTTTACGGACAAGTGGGAACAAGAAGTGGTTGTGTTGATGAAAAATAACAATGTGGCTGGTTCTTTGAGTACTCTTATGACAAAAGGCAAGGATGTTTTAGTTTGTGAATCTTCAAATGTGTTGTCTGAGGATTATGGAACTTTATCTGAAAGTTCTATGAAAGGAAAGGAGGTTGTTGTAGATGGAACACCCATTGGAGTTTCACAAGATTTGTTAACAAAGTTTTCTAATGCGGTGGTTAATCTTGATGATGATTCTGTTGATGTAGTCTGTGAGCAAGAAATTGTTGAAGTTGGTGTTAATAAACTCAAGGCTGCTGCTGTGAAGGATGTTGAGACTCCTTCTTCTGCTAAACCAATGGGGCAGCACAAGAAAACTGTTGCCAAGAGAGTGTCACCTCAAGGAATGGATCAAGAAGGTGAAAATGCTCCAATCAAGTTGTTGAAAAGGGCTGTGAAAATTGAAAAACTTCCATAG 1713 0.3672 MSLSVPNRNLFLNIEEINFDRTSWNIRAKIIRLWQVSDFNRTNVPFSLEMVLMDAAGDKIHATIKKTLIYKFKNDLIEGKVYCLENMGVATNSGAYHSTRHPYKLNFQYSSLVQRLSNFEILKSPYNFVPISEVAGDLIGLFTGYGQEREVTNQNGTTTKLNVIVLEADGHKLQCTLFGPYVNELNAFIAAGDLTNAVVIFQLAKAKSFQVIDMEFLGKMHIQNCMNCSVLKFNTSCPESLNFRESLTDAVETPSPLTMTQLSVESRVEPVDDFLYNTLRMTLQALKDATNESLNVVLATIKRILNPGAYWYTACVCSKAVIPDSRMFYCEKCNKHVHRIVPRFCIKVRVMDHTESTNFVIFDTQASSIFNRSCADMIQGAEPVKAKPSHNPKFEQSFRVRKICTDDAIIKQFTDKWEQEVVVLMKNNNVAGSLSTLMTKGKDVLVCESSNVLSEDYGTLSESSMKGKEVVVDGTPIGVSQDLLTKFSNAVVNLDDDSVDVVCEQEIVEVGVNKLKAAAVKDVETPSSAKPMGQHKKTVAKRVSPQGMDQEGENAPIKLLKRAVKIEKLP 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02027 570 Gene3D - 275 416 IPR012340 -
Trre12g02027 570 Pfam Replication factor-A C terminal domain 298 390 IPR013955 -
Trre12g02027 570 CDD RPA1_DBD_C 297 414 IPR047192 -
Trre12g02027 570 SUPERFAMILY Nucleic acid-binding proteins 285 387 IPR012340 -
Trre12g02027 570 CDD RPA1_DBD_A_like 26 113 - -
Trre12g02027 570 SUPERFAMILY Nucleic acid-binding proteins 11 118 IPR012340 -
Trre12g02027 570 Gene3D - 11 118 IPR012340 -
Trre12g02027 570 MobiDBLite consensus disorder prediction 526 555 - -
Trre12g02027 570 Pfam Domain of unknown function DUF223 49 134 IPR003871 -
Trre12g02027 570 Gene3D - 120 253 IPR012340 -
Trre12g02027 570 SUPERFAMILY Nucleic acid-binding proteins 126 247 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02027 Trre-Chr12 21446386 21448994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02027 24 399 Core DNA Replication Machinery Family AT4G19130 21.622 4.16e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02027 - - tpra:123915358 702.59