Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02026 ATGAGTTTGAGTGTTCCTAATCGTAATTTGTTTTTGAATATTGAAGAAATTAATTTTGATAGAACAAGTTGGAATATTAGGGCTAAGATTATAAGACTTTGGCAAGTGTCTGATTTTAACCGAACTAATGTTCCTTTTTCCCTTGAAATGGTATTAATGGATGCTGCTGGTGATAAGATTCATGCCACTATCAAGAAAACTCTGATTTACAAATTTAAAAATGATTTAATTGAAGGAAAAGTTTATTGTTTGGAAAACATGGGTGTCGCAACTAATTCTGGAGCTTATCATTCCACTCGCCACCCTTACAAGCTTAATTTTCAGTATAGCTCTTTGGTTCAAAGGCTTTCAAATTTTGAGATTCTGAAATCTCCATATAACTTTGTTCCAATTTCTGAAGTTGCGGGGGATTTGATTGGGTTGTTTACTGGTTATGGCCAAGAGCGTGAGGTAACTAATCAAAATGGAACCACAACCAAGCTGAATGTCATTGTTTTGGAAGCTGATGGGCATAAGCTTCAGTGTACTCTGTTTGGACCATATGTTAATGAACTGAATGCCTTTATTGCTGCTGGTGATCTTACTAATGCTGTGGTGATTTTTCAGCTTGCAAAAGCTAAAAGTTTCCAAGGCAAGATGCATATTCAGAACTGCATGAATTGTTCTGTTTTGAAGTTTAACACAAGTTGTCCAGAAAGTCTTAACTTTAGAGAAAGTCTAACTGATGCTGTGGAGACACCTTCTCCATTGACCATGACTCAACTTTCTGTTGAATCAAGAGTTGAACCAGTTGATGATTTTTTGTACAACACTCTAAGAATGACCTTGCAAGCTCTCAAAGATGCTACAAATGAATCATTGAATGTTGTTCTTGCTACTATTAAGAGGATTTTAAATCCGGGTGCTTATTGGTACACTGCATGTGTATGTAGCAAGGCCGTCATACCAGATTCTAGGATGTTCTATTGTGAAAAATGTAACAAGCATGTTCATAGGATTGTTCCTAGGTTTTGTATCAAAGTGAGAGTAATGGATCATACTGAATCAACAAATTTTGTCATCTTTGATACTCAAGCAAGCTCCATATTCAATAGGTCTTGTGCTGATATGATTCAAGGAGCTGAACCTGTTAAAGCAAAACCTTCTCATAATCCAAAGTTTGAGCAATCTTTCCGTGTTAGGAAGATTTGCACGGATGATGCAATCATTAAGCAGTTTACGGACAAGTGGGAACAAGAAGTGGTTGTGTTGATGAAAAATAACAATGTGGCTGGTTCTTTGAGTACTCTTATGACAAAAGGCAAGGATGTTTTAGTTTGTGAATCTTCAAATGTGTTGTCTGAGGATTATGGAACTTTATCTGAAAGTTCTATGAAAGGAAAGGAGGTTGTTGTAGATGGAACACCCATTGGAGTTTCACAAGATTTGTTAACAAAGTTTTCTAATGCGGTGGTTAATCTTGATGATGATTCTGTTGATGTAGTCTGTGAGCAAGAAATTGTTGAAGTTGGTGTTAATAAACTCAAGGCTGCTGCTGTGAAGGATGTTGAGACTCCTTCTTCTGCTAAACCAATGGGGCAGCACAAGAAAACTGTTGCCAAGAGAGTGTCACCTCAAGGAATGGATCAAGAAGGTGAAAATGCTCCAATCAAGTTGTTGAAAAGGGCTGTGAAAATTGAAAAACTTCCATAG 1692 0.3688 MSLSVPNRNLFLNIEEINFDRTSWNIRAKIIRLWQVSDFNRTNVPFSLEMVLMDAAGDKIHATIKKTLIYKFKNDLIEGKVYCLENMGVATNSGAYHSTRHPYKLNFQYSSLVQRLSNFEILKSPYNFVPISEVAGDLIGLFTGYGQEREVTNQNGTTTKLNVIVLEADGHKLQCTLFGPYVNELNAFIAAGDLTNAVVIFQLAKAKSFQGKMHIQNCMNCSVLKFNTSCPESLNFRESLTDAVETPSPLTMTQLSVESRVEPVDDFLYNTLRMTLQALKDATNESLNVVLATIKRILNPGAYWYTACVCSKAVIPDSRMFYCEKCNKHVHRIVPRFCIKVRVMDHTESTNFVIFDTQASSIFNRSCADMIQGAEPVKAKPSHNPKFEQSFRVRKICTDDAIIKQFTDKWEQEVVVLMKNNNVAGSLSTLMTKGKDVLVCESSNVLSEDYGTLSESSMKGKEVVVDGTPIGVSQDLLTKFSNAVVNLDDDSVDVVCEQEIVEVGVNKLKAAAVKDVETPSSAKPMGQHKKTVAKRVSPQGMDQEGENAPIKLLKRAVKIEKLP 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02026 563 SUPERFAMILY Nucleic acid-binding proteins 126 240 IPR012340 -
Trre12g02026 563 CDD RPA1_DBD_A_like 26 113 - -
Trre12g02026 563 Gene3D - 11 118 IPR012340 -
Trre12g02026 563 PANTHER OS03G0429900 PROTEIN 13 397 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre12g02026 563 Gene3D - 268 409 IPR012340 -
Trre12g02026 563 CDD RPA1_DBD_C 290 407 IPR047192 -
Trre12g02026 563 SUPERFAMILY Nucleic acid-binding proteins 11 118 IPR012340 -
Trre12g02026 563 SUPERFAMILY Nucleic acid-binding proteins 278 380 IPR012340 -
Trre12g02026 563 Pfam Domain of unknown function DUF223 49 134 IPR003871 -
Trre12g02026 563 Pfam Replication factor-A C terminal domain 291 383 IPR013955 -
Trre12g02026 563 MobiDBLite consensus disorder prediction 519 548 - -
Trre12g02026 563 CDD RPA1_DBD_B_like 137 232 - -
Trre12g02026 563 Gene3D - 120 246 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02026 Trre-Chr12 21446386 21448994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02026 14 363 Core DNA Replication Machinery Family AT2G06510 20.267 8.06e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02026 - - tpra:123915358 709.523