Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02010 ATGGAGCTTGATTTAAATGAGAAGCCTGTGGACCGAATTGAAGAGCAAATGAAACGGCTCGAGGCTATTTTAAAGGCAAAACAGACTCACAAGAAGCAAAAATGTTACACTCCAATTCAGATAACTAATTTTGCAGGAGAATTGTTAATAAAAACCGATAATGTTCAAGAAGATGAAAGCAAAGTGACCAAGAAAGAAGTTGAAGGAGGGACATCGGAATGCGAGAAAACACGTAAAAGGAAGGCTTCCTGTTTAGTTGCGAAGGCGTTGGGGATGGAAACATCCACAGATGGCGTTGCAGGCCGCACTAGAAACTTCTTTGACTGTAATATATGTTTGGATATGGCAATTGATGCTGTATTAACTTGCTGTGGTCACTTGTTTTGTTGGGAATGCTTCTATCAGTTACCATATGCTTATTCAAATGCCAAAGAGTGTCCTGTGTGTGCAGGAGAAGTTGTTGACGCCGATGTCATACCAGTATATGGCAATGGAAGGGTCGATGATAGTGGTCGGTTTGAATCGAAAGAATCTGGTTTAACAGTTCCTAGTCGGCCGTACGCACCTAGAGTTGAGAGTACTAGGCAGCGCCGCAGAAGACGCACCTTTACTTCTACAAACCATGATTTGTCTTTGTTTGGTAACTTTGGCGGATTGGAAGAGCCTGATCCGTTGCAACTTCCGATTATTTCTAATGATTGA 702 0.4217 MELDLNEKPVDRIEEQMKRLEAILKAKQTHKKQKCYTPIQITNFAGELLIKTDNVQEDESKVTKKEVEGGTSECEKTRKRKASCLVAKALGMETSTDGVAGRTRNFFDCNICLDMAIDAVLTCCGHLFCWECFYQLPYAYSNAKECPVCAGEVVDADVIPVYGNGRVDDSGRFESKESGLTVPSRPYAPRVESTRQRRRRRTFTSTNHDLSLFGNFGGLEEPDPLQLPIISND 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02010 233 Coils Coil 10 33 - -
Trre12g02010 233 SUPERFAMILY RING/U-box 101 159 - -
Trre12g02010 233 SMART ring_2 109 149 IPR001841 -
Trre12g02010 233 ProSiteProfiles Zinc finger RING-type profile. 109 149 IPR001841 -
Trre12g02010 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 68 201 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre12g02010 233 Pfam Zinc finger, C3HC4 type (RING finger) 108 153 - -
Trre12g02010 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 163 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02010 Trre-Chr12 20800872 20801573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02010 100 204 C3H Transcription Factor Family AT3G58030 52.830 1.28e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02010 - - cam:101495597 307.375