Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01999 ATGCTTCAGAGCCTTAAACGCAAGTTCCGGCGAGGAAGAGAGAGTTCCGGCCGAGAGAGAGTTCCGGTGGTGGTTCGCGGTGACACGGCGGTGCTTAACGACGGAGTTTCTTTCTCCCTCTTTCCTCTGCTTCGATCTGTTACTTTCTTTACATCTGCTGTTCTTCTTCAACAAACCTCCAATTTGAAAGCATTCCGATGTTATGCCTCTGCATCCCAGTCCGATCTCAATGAGCCAGAAAATCGAAAGCTTCTATATTGTATTCAATCCCTCAAGAAGAAGAACCTCTCTTTGTTGTCTGAATCTCATTATGACATTGATAATTCTGGGAAATATGTGAGGTACACTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTACGTGGAATGCCCCAAGCCAAGTTCCATGAGTAGGCAACAACTGATTCAAGAGAATCCGGTTTTGTCCAACATTGAACCCGAGCAAATTAAGGTTTGGTTTAAGAATAGAAGGTGTAGGGAGAAGCTGAGAAAAGAGGCTTCTGAGCTTCAGACTGTGAATAGGAGACTTGCTGCAATGAACAAGCTGTTGACGGAGGAAAACGATCGGCTGTAG 594 0.4495 MLQSLKRKFRRGRESSGRERVPVVVRGDTAVLNDGVSFSLFPLLRSVTFFTSAVLLQQTSNLKAFRCYASASQSDLNEPENRKLLYCIQSLKKKNLSLLSESHYDIDNSGKYVRYTAEQIEALEKVYVECPKPSSMSRQQLIQENPVLSNIEPEQIKVWFKNRRCREKLRKEASELQTVNRRLAAMNKLLTEENDRL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01999 197 ProSiteProfiles 'Homeobox' domain profile. 106 170 IPR001356 GO:0003677
Trre12g01999 197 Gene3D - 105 178 - -
Trre12g01999 197 SUPERFAMILY Homeodomain-like 106 172 IPR009057 -
Trre12g01999 197 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 108 197 IPR044830 GO:0003700
Trre12g01999 197 Pfam Homeodomain 111 168 IPR001356 GO:0003677
Trre12g01999 197 SMART HOX_1 108 174 IPR001356 GO:0003677
Trre12g01999 197 Coils Coil 162 196 - -
Trre12g01999 197 CDD homeodomain 111 168 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01999 Trre-Chr12 20731551 20734906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01999 100 197 Homeobox Transcription Factor Family AT4G32880 74.490 6.45e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre12g01999 Homeodomain 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01999 K09338 - psat:127136304 160.999