Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01995 ATGGATTGCCGATTTGAGACCGCAGAAACTCGAAGGAACAAGTGTGCAGCATGCTATAGGCAGTTCAACAAGGTGGAGCACCTAGTGGATCACATGAAGATATCTTACCATTCTGTTCATGAACCAACTTGTGGCGTTTGTAGGAAACATTGCAGATCCTTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAACAAGAATGCAGAGAAATCTTTGCCAACCGAGGGTGCAAGTTTTGCTTGAAAGTCCTTGATAGCCCTAACTCTCGCAGGATTCACCAACAAAAGTGCCAACTCAATGGATTAAATGGAATATGTGGTCGCTTTTCAAACTTGGGAATTCGCGATAATTTGACAATTGGTGGTGGAAGAGGACCACAAGTAGTTGCACTAGCTTGTAAAATGGTGGGAGGAGGAAGTGATGGCTCATTGGATCTATGTGCAAGAGTTTGCTTAATAGATGAGAATGAGAACATTATATTTCATTCTTATGTCACCCCACCAATTCCAGTCACAAATTACAGGTATGAGACAACAGGTATTAGACATGAATACTTAAGGGATGCAATGCCATTGAAACTAGTTCAAAGGAAGATTCAAGAATTCCTTTGTAATGGAGAACCTATGTGGACAATTCGTTCAAGAGGAGGAAAAGCTAGGATTCTTGTGGGTCATGGTTTAGATCATGACCTTGCTTCTTTGCAAATTGAGTATCCAACACCAAAAATAAGGGACACTGCAAAATACCCTCCACTCATGAAAACAAGCAAGCTCAGCAATTCACTCAAATACTTAACACAAGCATATCTTGGATATGACATTCAAACTGGGATACAAGATCCTTATGATGATTGTGTTGCAGCAATGAGACTATACATGAGAATGAGGACACAAATGCACAAAATAGAAGATTACCCTTTGGCATCTGATCCACAAAACAGAAATAATTTTGCTTCATGGAGGCAAAGTGAGCTTGAAAGAATGAGTCCTGAACAAATGCTAGATATCTCAAGATCTGATTACTACTGTTGGTGCATGGATCCATAA 1053 0.4008 MDCRFETAETRRNKCAACYRQFNKVEHLVDHMKISYHSVHEPTCGVCRKHCRSFESLREHLIGPLPKQECREIFANRGCKFCLKVLDSPNSRRIHQQKCQLNGLNGICGRFSNLGIRDNLTIGGGRGPQVVALACKMVGGGSDGSLDLCARVCLIDENENIIFHSYVTPPIPVTNYRYETTGIRHEYLRDAMPLKLVQRKIQEFLCNGEPMWTIRSRGGKARILVGHGLDHDLASLQIEYPTPKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYDDCVAAMRLYMRMRTQMHKIEDYPLASDPQNRNNFASWRQSELERMSPEQMLDISRSDYYCWCMDP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01995 350 CDD REX4_like 131 294 IPR037431 GO:0006364|GO:0008408
Trre12g01995 350 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Trre12g01995 350 SMART exoiiiendus 129 303 IPR013520 -
Trre12g01995 350 Gene3D - 128 311 IPR036397 GO:0003676
Trre12g01995 350 SUPERFAMILY Ribonuclease H-like 143 300 IPR012337 -
Trre12g01995 350 FunFam RNA exonuclease 4 126 313 - -
Trre12g01995 350 Pfam Exonuclease 147 293 IPR013520 -
Trre12g01995 350 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 17 337 IPR047021 GO:0004527
Trre12g01995 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01995 Trre-Chr12 20678625 20681241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01995 1 349 C2H2 Transcription Factor Family AT3G27970 75.424 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01995 - - gmx:100813973 648.277