Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01987 ATGACGACGGCGATTACGGCGGCGGAACCCGACCTAAAAACATACTGGTGCCATGAATGCGACATGAGCGTCTCTCTAACTTCTTCCTCAACTCCTTCACCTCTTCTCTGTCCTCATTGTCACACTCACTTCCTCGAACTCATGGATTCACCTTTCTCCCAAAACGACGTCGAATCAACTTCTTCTCTATTCGACGTCGTTTTCCAAGACGCACTTTTACTACTCACACCTCCTATAACCAAACCACGCACCACCGAAATACTAATCCCTAAAATAACCGTCACACAAACGCTTCTTACACTTCTCGATCCAAACGGTGTCGTTTTATGTGCAGTTTGTAAAGAATCGATTTATGTTGATGAAGAAGCGAAACAACTTCCTTGTGATCATCTTTATCATTCTGATTGTATTACTCCGTGGCTTCTTCTTCGATCTTCTTGTCCTCTTTGTCGGTTCCGAATCTCGGAACAAGAAGAGGATCAGAATGATGATGAGGATGAAGATGATGATGTTGTTGTTGGTGGTGGTGCTGGTGCTGATGTGATGAGGCAGATGATGGAGAATCTTGATCCTGAAATTCTTTGCGGTATATAG 594 0.4394 MTTAITAAEPDLKTYWCHECDMSVSLTSSSTPSPLLCPHCHTHFLELMDSPFSQNDVESTSSLFDVVFQDALLLLTPPITKPRTTEILIPKITVTQTLLTLLDPNGVVLCAVCKESIYVDEEAKQLPCDHLYHSDCITPWLLLRSSCPLCRFRISEQEEDQNDDEDEDDDVVVGGGAGADVMRQMMENLDPEILCGI 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01987 197 Pfam Ring finger domain 110 151 IPR001841 -
Trre12g01987 197 SUPERFAMILY RING/U-box 109 163 - -
Trre12g01987 197 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 64 153 - -
Trre12g01987 197 SMART ring_2 110 150 IPR001841 -
Trre12g01987 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 169 IPR013083 -
Trre12g01987 197 ProSiteProfiles Zinc finger RING-type profile. 110 151 IPR001841 -
Trre12g01987 197 Pfam zinc-ribbon 14 48 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01987 Trre-Chr12 20612722 20615117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01987 8 70 C3H Transcription Factor Family AT3G60080 49.254 1.78e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01987 K11982 - gmx:100782164 202.986