LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g01974	ATGAATCCGAAGGTGAATCGGAGAAACCTAAACGAAAGAAAGAAGCTTCCCAAACTAAACGTCCTTCTTCTTCTGTTGCTGCTAAACTCTCAGATTAATCCCTCTGCTGAAGCTAATAATGAATCTAGGTTAGGGTTAGAGCAAAAATGTGAAGTAGTAGATGTGAATAAATGTTCGGAAAATGACGAGAAAATGGTGGTGGAACAACCTAATGATTTTCCTTCTGCAATTAATGGGAATTTAGTTGAAGAGAAAGCGGTGAAGGTGAAAGACGATGAAATGGAAGCAGAATCTGTTATTAAAAAAGAGGGTTTCACTTTGAATGCGAAAGTTAATCAAGAGGTGGTGGACTCAAAATTGTCTGCTACTGTTGGTTGGCAGGCAGCGAGGAGTGGTGCTGGTGGAGGTGGGAAGATAAACATTGCTGATTCGAATAATCAACAATATTCCGAGTTCAATTTGGATCCCGAGGGATCACTGCTTTTCTACATACTTGATGCTTATGAGGAGATTATGGAACCAAATATGGGTACTCTTTATTTGTTTGGGAAGCTTGAGAAAGATGTCCAAGAGTCTCGAATTTCTCCTGCAGATTTCCGTAAAAAGCTTCAAGATGCAGTATCCGATACAAAGAATGAGGTAGCAAAACATCTGGTGGATCTGGGCGTTTCTACCTTTAGCATGGCACCTGTTAAGCGGAAAGATGCATTTGAATGTCAATGA	723	0.4025	MNPKVNRRNLNERKKLPKLNVLLLLLLLNSQINPSAEANNESRLGLEQKCEVVDVNKCSENDEKMVVEQPNDFPSAINGNLVEEKAVKVKDDEMEAESVIKKEGFTLNAKVNQEVVDSKLSATVGWQAARSGAGGGGKINIADSNNQQYSEFNLDPEGSLLFYILDAYEEIMEPNMGTLYLFGKLEKDVQESRISPADFRKKLQDAVSDTKNEVAKHLVDLGVSTFSMAPVKRKDAFECQ	240

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g01974	240	Gene3D	-	155	219	-	-
	Trre12g01974	240	PANTHER	DNA POLYMERASE ALPHA CATALYTIC SUBUNIT	40	188	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g01974	Trre-Chr12	20523278	20525065	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g01974	70	238	Core DNA Replication Machinery Family	AT5G67100	38.164	1.07e-32	123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g01974	K02320		-	gmx:100798779	169.474