Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01971 ATGCCGGCAGAGAGACAAAGATCTCTTTTGAGTTTTTCCATCAAAGATAAGAACAACAATAGAACAAATATGGAATCAAAAGGTGGAGAAGTTAGAAGGCTTCATATAATCTACTTTCTTAGTCACTTAGGTGGTCATGCAGAACATCCTCATCTTATTCGTGTTCTTCATCTTACTCGAAATGGTGTTTATCTTCGAGATATTAAGAGATGGCTTGGTGAATTGAGAGGAAAAGACTTACCTGAATCCTATGCTTGGTCCTACAAGAGGAGGTACAAGAGTGGATATGTGTGGCAGGATTTAATGGATGATGACCTAATAACCCCCATTTCTGATAATGAATATGTCCTCAAAGGATCACAAATCCACACTACCCCTTTTGAAACTCATTCTAGTAATTCAGTTAATGAAAAGAAAAATGATACTGATATACTTGTTGAGAAAGTAAAACTTGAAGAGGACGAACAAAAGCGGCAAAATAAACCGTCTTTATCGGAAATTCAGAAAGAAACTGATACAAAAAAGAATAATCTAAATCAAGGGTCATCAGAAATAAGTCAAGATTCATTGGTTTTCAGCTCGGATAGATCATCGGTGACCGATGATGATACTTGTTCTAAAGTTGAAGAAGAGAAGCTTTTAGGGAATGGAAAAGAAGGTTTAGTTGAAAAGAATCATGACAACAAGTTTGAGGCTTTTTCATTTCCTTCTTTGTATCATAACTTGATGAGCAAGAAAGGTAAAAAAGATGGACATAATAACAAAACCGATACTACACCTCCTGATTCGACGTTTTCTACTCCGACTTCATCAACTTCATCACAATCTCAATCGTCTTTTACTAAGATAAGAAGCAATTCTACTAGAGTTACTAGTGTGTTTAGAAATTGGATTGGTTGTGGAACTGTTGCAACAAATGATGCTGCTTTTCTCTCTATGAATCCTGCTCAGAAAATTCTGTCTAAGGAAGGTAACAATGTGCCTGAAAAAAGGGGTGAGATTTGTAAAGGAGATAAATTGGGAGGGTCAGCTAGGTGTTTTGGGACTCCTTGGAAATATCAAGAACAGAATGAACATTATGGAGCAAGAAAAAGCTGTGATGGAGAGGAAATACAAAAGGGAAGGAAAAAGCTAAGTGAGTTAATGAGTCAAACTTCTTATAAACCATTTGGTGGACCATTTTGCTCGCAATGTGGTAAATCATTCAAGCCAGAAAAAATGCACAAACACATGAAATCTTGTAAAGGAATGAAAAGCATGGGAACTTCAACTATTGGTGAGGAATCAACAAAGCTTCAAAGATCAACTTCATCATATAAAGATTACCTTTTGCAAAATTAA 1341 0.3594 MPAERQRSLLSFSIKDKNNNRTNMESKGGEVRRLHIIYFLSHLGGHAEHPHLIRVLHLTRNGVYLRDIKRWLGELRGKDLPESYAWSYKRRYKSGYVWQDLMDDDLITPISDNEYVLKGSQIHTTPFETHSSNSVNEKKNDTDILVEKVKLEEDEQKRQNKPSLSEIQKETDTKKNNLNQGSSEISQDSLVFSSDRSSVTDDDTCSKVEEEKLLGNGKEGLVEKNHDNKFEAFSFPSLYHNLMSKKGKKDGHNNKTDTTPPDSTFSTPTSSTSSQSQSSFTKIRSNSTRVTSVFRNWIGCGTVATNDAAFLSMNPAQKILSKEGNNVPEKRGEICKGDKLGGSARCFGTPWKYQEQNEHYGARKSCDGEEIQKGRKKLSELMSQTSYKPFGGPFCSQCGKSFKPEKMHKHMKSCKGMKSMGTSTIGEESTKLQRSTSSYKDYLLQN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01971 446 MobiDBLite consensus disorder prediction 174 199 - -
Trre12g01971 446 MobiDBLite consensus disorder prediction 151 173 - -
Trre12g01971 446 MobiDBLite consensus disorder prediction 151 206 - -
Trre12g01971 446 MobiDBLite consensus disorder prediction 257 284 - -
Trre12g01971 446 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 23 430 IPR010369 -
Trre12g01971 446 MobiDBLite consensus disorder prediction 244 284 - -
Trre12g01971 446 MobiDBLite consensus disorder prediction 417 446 - -
Trre12g01971 446 Pfam Protein SOSEKI, plant 35 293 IPR010369 -
Trre12g01971 446 MobiDBLite consensus disorder prediction 413 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01971 Trre-Chr12 20498195 20502032 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g01971 DUF966 7.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01971 - - gmx:100785001 515.768