Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01960 ATGAACCCATTAACACTGGTGAAACGGATTCAGAAAATTAATTCAAGAGAAGCTGCGCTAAACATCAGCGAAGAAGCTTCGTGGCACACTAAATACAAAGATTCTGCTTATGTTTTTGTTGGTGGTATTCCCTTTGATCTCACTGAGGGTGATTTGCTAGCTGTTTTTGCTCAATATGGGGAAGTTGTTGATGTTAATTTAGTTAGAGACAAAGGTACTGGCAAATCAAAGGGTTTTGCATTTATTGCATATGAAGATCAAAGAAGCACTAATCTTGCTGTTGATAATTTAAATGGAGCTCAGGTTTTAGGTAGAATTATTAGGGTGGATCATGTTGATAAATATAAGAAGAAGGAAGAGGAAGATGAAGAGACAGAACGGCAGAAAAGGGAGGCCCGTGGTGTTTGTCGAGCTTTCCAAAGAGGGGAATGTACTCGTGGAGTTGGATGCAAATTTTCTCATGATGAGCAAAGAGCTGCAAATACTGGTTGGGGTGAGAATGGCAATGCAAAATGGGATAATGACAAATATGATGGTCCGAAGAAAGAAAGAAGATATGACAATAACCAATCAAATCGCATTCCAGAAACTAGAGACAGAGATTCACGCTCCATAGCCCATGGCAATGAGATGAAATTAGACAACCAATCCAAGCAAAGTGATAGAAGAGAGAAAAATACGTTGCGGAGGCATGATGACGATGCTAAATTTGAGGGAAGAGAAAATAGCAGTAGAAGAGAAGCAAAGCGACCAAGAAGGCACGATGACGATGAATTTGAACACCGGTTAAGAGAAGATCGACATAGGAGAGAAGAAAAAATATCAAGGGGTGGTTACGATGGTAGGGAATCTGAGCCAAGAGATAACAGAAGGGAAGACAAAAGGTCAGCAAAGCGAGATGATATCGTGCTTGAGTCCAAGTCAAGGGATTCTGATGTAAGAGACGATAAAAGACCAATTAGGCAGGATGTTGATGATTTTCGAAGCAAGTCAAGAGAACATGGTTCCAGGGAAGATAGGAGATCAAGAAAGCACACTGAAGACGAATCTGTGCCAAGGTCAAGAGAAGATCATGATAGGAAGCAAGATAACAGGTCGTATAGAAATGATACTGATCGATCTGAATCTAAAGGAAGATACGAATCTGAACGAAGAGAAGAAAAGAGGTCTCGAAGGTAA 1179 0.4046 MNPLTLVKRIQKINSREAALNISEEASWHTKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGECTRGVGCKFSHDEQRAANTGWGENGNAKWDNDKYDGPKKERRYDNNQSNRIPETRDRDSRSIAHGNEMKLDNQSKQSDRREKNTLRRHDDDAKFEGRENSSRREAKRPRRHDDDEFEHRLREDRHRREEKISRGGYDGRESEPRDNRREDKRSAKRDDIVLESKSRDSDVRDDKRPIRQDVDDFRSKSREHGSREDRRSRKHTEDESVPRSREDHDRKQDNRSYRNDTDRSESKGRYESERREEKRSRR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01960 392 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 264 - -
Trre12g01960 392 MobiDBLite consensus disorder prediction 171 392 - -
Trre12g01960 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Trre12g01960 392 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Trre12g01960 392 FunFam Uncharacterized protein 127 203 - -
Trre12g01960 392 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Trre12g01960 392 MobiDBLite consensus disorder prediction 160 392 - -
Trre12g01960 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Trre12g01960 392 Coils Coil 115 135 - -
Trre12g01960 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Trre12g01960 392 SMART rrm1_1 37 110 IPR000504 GO:0003723
Trre12g01960 392 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Trre12g01960 392 Gene3D - 128 236 - -
Trre12g01960 392 SUPERFAMILY RNA-binding domain, RBD 27 116 IPR035979 GO:0003676
Trre12g01960 392 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
Trre12g01960 392 Gene3D - 8 127 IPR012677 -
Trre12g01960 392 SMART c3hfinal6 132 156 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01960 Trre-Chr12 20322284 20327063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01960 13 109 Eukaryotic Initiation Factors Gene Family AT2G36660 26.804 5.58e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01960 K13107 - gmx:100792988 514.612