Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01953 ATGAGTTCTGATTTTTCGTCCGCCACTTCTGATCTCCGTTGCACCGATGAACTCGTCAAGAAGTTCTTGTGTCCGATTTGTTTGGAGATATATTTTGAGCCATGTACCACTCCTTGTGGTCACAGTTTTTGCAAAGAGTGTTTGCAATCTTCCATGTATATGCTTAGCACAAACCCAAAGTGCCCTTTATGCAGGGGATCAATAAGTGATGGATTATCGTACTGTGTGAACGTAGCTCTTTGGAACGCAGTTCAATTCTTATTTCCGCGGGAAGTTGAATCGCGAAAAGCAATTGATGCCTTAAGTAGATCAAAAAAATTAAGTGCACAACCATATAAAAATTCTAGTCGTTCTTTGCCTCCATTGAATGATGTTATAGATATTATAAGCTATGTGATGTTAGCTTTGCTTGTTATTGCAGTGCCTTACATGACATATGTTGTATTCGAGAAAGACTTTCGTTAA 465 0.3871 MSSDFSSATSDLRCTDELVKKFLCPICLEIYFEPCTTPCGHSFCKECLQSSMYMLSTNPKCPLCRGSISDGLSYCVNVALWNAVQFLFPREVESRKAIDALSRSKKLSAQPYKNSSRSLPPLNDVIDIISYVMLALLVIAVPYMTYVVFEKDFR 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01953 154 SMART ring_2 24 64 IPR001841 -
Trre12g01953 154 ProSiteProfiles Zinc finger RING-type profile. 24 65 IPR001841 -
Trre12g01953 154 ProSitePatterns Zinc finger RING-type signature. 39 48 IPR017907 -
Trre12g01953 154 PANTHER UNCHARACTERIZED 13 119 - -
Trre12g01953 154 Pfam RING-type zinc-finger 24 62 IPR027370 -
Trre12g01953 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 95 IPR013083 -
Trre12g01953 154 SUPERFAMILY RING/U-box 16 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01953 Trre-Chr12 20237680 20238432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01953 24 69 RAD5 or RAD16-like Gene Family AT5G22750 47.826 1.61e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01953 - - tpra:123898852 257.684