Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01949 ATGGGAACACCTGTGAACATTATTGTTGGATCACAGGTTTGGGTTGAGGATCCTGAGATTGCATGGATTGATGGTGAGGTCACACAAATCAATGGCACTAATGTTACCATTATTACCACAGATGGTAAAACTGTTGTGGCAGAAATTTCAAGTATATACCCAAAAGATACAGAAGCACCACCTGCAGGGGTTGATGACATGACCAAGCTCGCATACCTCCACGAACCCGGAGTCCTGTATAACCTTTTGTGTCGTTTCTCACTCAATGAGATATATACGTATACCGGGAATATTTTAATTGCGGTGAATCCTTTCCGAAGACTTCCACATTTATATGACAGCCATATGATGGAGCAGTACAAAGGAGCCGCATTTGGAGAGCTTAGTCCTCACCTTTTTGCTGTAGCAGACACTTGTTACAGGGCAATGATAAATGAAAATGGAAGTCAGTCTATTTTGGTTAGTGGAGAAAGTGGAGCTGGTAAAACCGAGACGACAAAAATGCTAATGAGATATCTAGCTTTCATGGGAGGTAGATCGAATACCGAAGGAAGAACAGTAGAACAACAGGTTTTGGAGTCCAATCCAGTGTTAGAAGCATTTGGCAATGCTAAAACTGTCAAAAACAACAACTCAAGTCGTTTCGGTAAATTTGTTGAAATTCAATTTGACAAGAATGGAAAGATTTCTGGAGCTGCAATCCGCACGTACCTCCTTGAAAGGTCACGAGTTTGCCAAGTTTCTGATCCGGAGAGAAACTATCATTGCTTTTACATGCTTTGTGCAGCTCCACAAGAGGATGTGAAGAAGTACAAGTTAGGGGATCCGAGGAAATTCCGCTATCTTAATCAATCAAGCTGTTATGAAGTGTCAAATGTAGATGACGCGAAGGAATATTTGGAAACAAGAAATGCAATGGATATTGTTGGCATTAATCAGGATGAACAGGATGCTATCTTTCGTGTCGTAGCCGCAATCCTACATCTTGGAAACATTGACTTTGTCAAAGGAAATGAATTCGATTCATCCAAATTGAAAGACGAAAAATCACTCTATCACCTTCAAACAGTTGCGGAGTTATTCATGTGTGATGAGAAATCACTAGAAGACTCACTTTGTCAGCGCGTCATAGTTACCCCGGATGGCAACATTACAAAACCACTAGACCCGGATGCTGCTTCTTTGAGCCGAGACGCTTTGGCAAAAACCGTATACTCCAGATTGTTTGATTGGATTGTGGATAAGATTAACAGTTCAATTGGTCAAGATTCTAATGCAGTTAGCTTAATAGGAGTACTCGACATTTATGGATTCGAAAGCTTCAAAATCAACAGTTTTGAGCAACTATGTATCAACTTAACAAATGAGAAGTTACAACAACATTTTAATCAGCATGTATTCAAGATGGAGCAAGAAGAGTACACAAAGGAGGAAATTGATTGGAGCTATGTAGAATTTGTTGATAATCAAGATGTTCTTGATCTTATTGAGAAGAAACCTGGTGGAATTATTGCTCTTCTTGATGAAGCTTGCATGTTTCCGAAGTCAACACACGAGACTTTTGCACAAAAAATGTACCAGACATACAAAGCGCACAAACGGTTCAGCAAGCCAAAACTTTCTCGAACAGACTTCATAGTTAACCACTACGCCGGAGATGTCACATACCAAGCAGATTATTTTCTTGATAAGAATAAAGATTATGTTGTAGCAGAACATCAAGCTCTTTTATGTGCTTCAAAGTGCACATTTGTTGCTAATCTTTTCCCTCCTTTACCTGAGGAAACATCGAAGCAATCAAAATTCTCTTCCATTGGTTCACAGTTTAAGCAACAACTGCAATCTCTCATGGAGACACTGAGCACCACTGAACCGCATAACATAAGATGTGTGAAACCAAATACAGTTTTGCAGACGTAG 1920 0.3984 MGTPVNIIVGSQVWVEDPEIAWIDGEVTQINGTNVTIITTDGKTVVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLYNLLCRFSLNEIYTYTGNILIAVNPFRRLPHLYDSHMMEQYKGAAFGELSPHLFAVADTCYRAMINENGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSNTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPQEDVKKYKLGDPRKFRYLNQSSCYEVSNVDDAKEYLETRNAMDIVGINQDEQDAIFRVVAAILHLGNIDFVKGNEFDSSKLKDEKSLYHLQTVAELFMCDEKSLEDSLCQRVIVTPDGNITKPLDPDAASLSRDALAKTVYSRLFDWIVDKINSSIGQDSNAVSLIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKAHKRFSKPKLSRTDFIVNHYAGDVTYQADYFLDKNKDYVVAEHQALLCASKCTFVANLFPPLPEETSKQSKFSSIGSQFKQQLQSLMETLSTTEPHNIRCVKPNTVLQT 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01949 639 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre12g01949 639 Pfam Myosin head (motor domain) 64 635 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre12g01949 639 Gene3D - 252 310 - -
Trre12g01949 639 Gene3D - 439 623 - -
Trre12g01949 639 FunFam Myosin 2 312 428 - -
Trre12g01949 639 PANTHER MYOSIN 54 638 - -
Trre12g01949 639 FunFam Myosin heavy chain 252 307 - -
Trre12g01949 639 Pfam Myosin N-terminal SH3-like domain 10 47 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre12g01949 639 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Trre12g01949 639 ProSiteProfiles Myosin motor domain profile. 62 639 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre12g01949 639 Gene3D Kinesin motor domain 65 636 IPR036961 -
Trre12g01949 639 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre12g01949 639 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre12g01949 639 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre12g01949 639 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre12g01949 639 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre12g01949 639 CDD MYSc_Myo11 76 638 IPR036018 -
Trre12g01949 639 SMART MYSc_2a 56 638 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre12g01949 639 FunFam Class V myosin 439 577 - -
Trre12g01949 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 636 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01949 Trre-Chr12 20178571 20182465 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01949 1 638 Myosins gene family AT1G08730 78.527 0.0 1084
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01949 K10357 - gmx:100817933 1217.22