Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01945 ATGCAGGGAAGTGGAGAATTAACAGTTCCTCCAGGGTTCAGGTTCCACCCTACTGATGAGGAGCTTCTTTACTATTATTTAAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTTATTAGAGAAGTTGATCTCAATAGACTTGAGCCATGGGATCTCAAAGATAAGTGTAGGATTGGATCAGGGCCACAAAATGAATGGTATTTCTTCAGCCACAAGGATAAGAAATATCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGGTTTTGGAAAGCAACAGGAAGGGACAAAGCCATATATCACACAAATTCCAAAAGGATTGGAATGAGGAAAACATTAGTTTTTTATACTGGACGTGCTCCTCATGGCCATAAAACTGATTGGATCATGCATGAGTACCGTCTTGATGATGATGATACTGCTGAAGTTCAGGAAGATGGATGGGTTGTATGCAGGGTATTCAAAAAGAAAAACACAAACAGAGGTTACCAACAAGAAATTGAAGAAGATCAAGATCAAATAATTAACCACATGAGATCAACAAATTCTCAAAGCCATTTTCTAGAGCCAAAACACAATCATCACCACATGCAACAATTAGGACTATTTGATTACAACAATAACAACACTTTTGATGGTACAATTCATCTACCACAATTATTTAGTCCAGAATCATCAGCTCTAGCACCACCACCACCGCCGCCGCCTCCGCCGCCAACTTCTTTTCATAATTCATCAATGGATATCCTTGAATGTTCTCAAAACTTATTGAGGCTCACAACAACTACTACTCCTAATCTCATGCAACAACATCAAGGAGAAAGATTAATCAATGGTGGTGATTGGTCATTCTTGGATAAATTACTTGCATCTCACAATGGAATGGATCAGAATCTAAGAAACAAATTATGTAACACTTCTAATAATCATCAAGTTTCAGCTTCTGCTTCTGTTGGATCAACTTCTGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGCCTCATGATATTATGAAATTTTCAAAGTAA 1041 0.3766 MQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDDDTAEVQEDGWVVCRVFKKKNTNRGYQQEIEEDQDQIINHMRSTNSQSHFLEPKHNHHHMQQLGLFDYNNNNTFDGTIHLPQLFSPESSALAPPPPPPPPPPTSFHNSSMDILECSQNLLRLTTTTTPNLMQQHQGERLINGGDWSFLDKLLASHNGMDQNLRNKLCNTSNNHQVSASASVGSTSAQKFPFHYLGCEPHDIMKFSK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01945 346 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Trre12g01945 346 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
Trre12g01945 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 244 - -
Trre12g01945 346 MobiDBLite consensus disorder prediction 225 249 - -
Trre12g01945 346 FunFam NAC domain-containing protein 18 163 - -
Trre12g01945 346 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Trre12g01945 346 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Trre12g01945 346 MobiDBLite consensus disorder prediction 228 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01945 Trre-Chr12 20113809 20116416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01945 1 346 NAC Transcription Factor Family AT1G79580 54.593 4.65e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g01945 NAM 7.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01945 - - vun:114178728 473.396