Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01944 ATGATGCAGGGAAGTGGAGAATTAACAGTTCCTCCAGGGTTCAGGTTCCACCCTACTGATGAGGAGCTTCTTTACTATTATTTAAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTTATTAGAGAAGTTGATCTCAATAGACTTGAGCCATGGGATCTCAAAGATAAGTGTAGGATTGGATCAGGGCCACAAAATGAATGGTATTTCTTCAGCCACAAGGATAAGAAATATCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGGTTTTGGAAAGCAACAGGAAGGGACAAAGCCATATATCACACAAATTCCAAAAGGATTGGAATGAGGAAAACATTAGTTTTTTATACTGGACGTGCTCCTCATGGCCATAAAACTGATTGGATCATGCATGAGTACCGTCTTGATGATGATGATACTGCTGAAGTTCAGGAAGATGGATGGGTTGTATGCAGGGTATTCAAAAAGAAAAACACAAACAGAGGTTACCAACAAGAAATTGAAGAAGATCAAGATCAAATAATTAACCACATGAGATCAACAAATTCTCAAAGCCATTTTCTAGAGCCAAAACACAATCATCACCACATGCAACAATTAGGACTATTTGATTACAACAATAACAACACTTTTGATGGTACAATTCATCTACCACAATTATTTAGTCCAGAATCATCAGCTCTAGCACCACCACCACCGCCGCCGCCTCCGCCGCCAACTTCTTTTCATAATTCATCAATGGATATCCTTGAATGTTCTCAAAACTTATTGAGGCTCACAACAACTACTACTCCTAATCTCATGCAACAACATCAAGGAGAAAGATTAATCAATGGTGGTGATTGGTCATTCTTGGATAAATTACTTGCATCTCACAATGGAATGGATCAGAATCTAAGAAACAAATTATGTAACACTTCTAATAATCATCAAGTTTCAGCTTCTGCTTCTGTTGGATCAACTTCTGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGCCTCATGATATTATGAAATTTTCAAAGTAA 1044 0.3764 MMQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDDDTAEVQEDGWVVCRVFKKKNTNRGYQQEIEEDQDQIINHMRSTNSQSHFLEPKHNHHHMQQLGLFDYNNNNTFDGTIHLPQLFSPESSALAPPPPPPPPPPTSFHNSSMDILECSQNLLRLTTTTTPNLMQQHQGERLINGGDWSFLDKLLASHNGMDQNLRNKLCNTSNNHQVSASASVGSTSAQKFPFHYLGCEPHDIMKFSK 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01944 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 245 - -
Trre12g01944 347 FunFam NAC domain-containing protein 19 164 - -
Trre12g01944 347 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
Trre12g01944 347 MobiDBLite consensus disorder prediction 229 246 - -
Trre12g01944 347 Gene3D NAC domain 19 165 IPR036093 GO:0003677|GO:0006355
Trre12g01944 347 MobiDBLite consensus disorder prediction 226 250 - -
Trre12g01944 347 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Trre12g01944 347 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01944 Trre-Chr12 20113809 20116419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01944 2 347 NAC Transcription Factor Family AT1G79580 54.593 5.55e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g01944 NAM 7.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01944 - - vun:114178728 475.322