Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01939 ATGGTGCAACTTCCCTGCGACTCTGATGGCCACTGCATGGTCTGTAAAAATAATCCACCCTACACTGAAATTTTACCATGTCGGACATGCGCCGCTCCATGGCACATCCCTTGTCTTCTAATCCCTCCCACCACTTTCTTAGATTGGGACTGCCCAGACTGTTGCACACCCCAACAAAACAACCATGCTCCGCCTCTCGCCGAAAACCTCATCTCTGCCATTCAAGCCATTCAATCTGATATTTCACTCACTGAGGTGGAAAAGGCAATAAAATGCCAGAAACTTGTAGGTGGATCATCTAAACTACATTCAGATAACAATAAAAGCAATGGCGTGCATGATATCTTTGATGGAACCTTAAATTGCTCTTTTTGTATGCAACTACCAGAGAGACCTATCACGACGCCTTGTGGGCATAACTTTTGCCTTAGGTGTTTTGAGAAGTGGATTGGAAAAGGAAAAAATGTGTGCGCTAAATGCAGGAGTTCAATTCCATCAAAGATTGCAAGTCATCCTCGTATTAACTCACAACTAGCGATTGCAATTCGATTAGCAAAATTGGCGAGATCAGAGGGAATAAGAGAAAACATAGACATTTCAACTAAGAATGCACATTGTTTTATGCACAATGATGATCGTCCTAACACGGCATTCACTACGGAGCGAGCAAAGAAAGCTGGGAAGGCAAATGCATGTTGTGGGAAAATATTTGTTACAATTCCATCTGATCATTTTGGACCAATCCTTGCAGAGCATGATCCAATACGGAATCGCGGTGTCGTAGTGGGTGACATATGGTCGGATAGGATGGAATGTAGACAATGGGGTGCTCGTTTTCCTCATGTTGCTGGAATTGCTGGTCAGAGTAATCATGGTTCACAATCTGTTGCTCTTTCAGGTGGTTACATCGATGATGAGGACCATGGTGAGTGGTTCCTTTACACCGGAAGTGGTGGAAGAGACCTTAGTGGAAACAAGCGTATAAACAAACAACATTCCTTTGATCAAATATTTGATTACATGAATGAGGCCTTGAGAATTAGTTGCCTTAAAGGGTATCCTGTTCGGGTTGTTAGGTCCCACAAGGAGAAATGTTCCTTTTATGCACCGGAAGTTGGAGTGCGATATGATGATATTTATAGAATAGAGAAATGCTGGCGTAAAAATGGAATACATGGTCACAAAGTTTGTAGGTACTTGTTTGTGAGATGTGACAATGAGCCAGCCCCATGGACAAGTGATTTATATGGAGACCGCCCCCGTCCATTGCCTAAAATTAAAGAGTTGAAGAATGCAATTGATATAACTGAAAGAAAGGATGTTCCATCTTGGGACTATGATGAGGAAAATGGTTGTTGGTTATGGAAGAAGCCTCCACCAAAAAGTAAGAAAATGGCTTCCATTGTGAATCCAATTGATGGAACAATAATAAGAGATTTTAAGCCAAAGACAAAAAGAGTTTCTTTAAAACTAAAAGAGAGGATATTGAAAGAGTTTGGTTGCAATATATGTCACAATGTGTTAGTTTTCCCTCTTACTACTCCTTGTGCTCACAACTTCTGCAAAACATGCTTGGAGGATACCTTTTCTGGCCAAAGTTATATCAAGAAGAGAGTTTATGAAAATGGACGCACTTTGCGATCATTGAAGAACATTATAAGATGTCCTTCATGTTCTAATGATATTGCTGATTTTCTTCAAAATCCACAGGTTAACAGAGAAATGATGAATGTTATAGAATCACTCCAGCGGCAGACTGAACAAATGGATGCAAATTCTGAAGAATGA 1788 0.4072 MVQLPCDSDGHCMVCKNNPPYTEILPCRTCAAPWHIPCLLIPPTTFLDWDCPDCCTPQQNNHAPPLAENLISAIQAIQSDISLTEVEKAIKCQKLVGGSSKLHSDNNKSNGVHDIFDGTLNCSFCMQLPERPITTPCGHNFCLRCFEKWIGKGKNVCAKCRSSIPSKIASHPRINSQLAIAIRLAKLARSEGIRENIDISTKNAHCFMHNDDRPNTAFTTERAKKAGKANACCGKIFVTIPSDHFGPILAEHDPIRNRGVVVGDIWSDRMECRQWGARFPHVAGIAGQSNHGSQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRINKQHSFDQIFDYMNEALRISCLKGYPVRVVRSHKEKCSFYAPEVGVRYDDIYRIEKCWRKNGIHGHKVCRYLFVRCDNEPAPWTSDLYGDRPRPLPKIKELKNAIDITERKDVPSWDYDEENGCWLWKKPPPKSKKMASIVNPIDGTIIRDFKPKTKRVSLKLKERILKEFGCNICHNVLVFPLTTPCAHNFCKTCLEDTFSGQSYIKKRVYENGRTLRSLKNIIRCPSCSNDIADFLQNPQVNREMMNVIESLQRQTEQMDANSEE 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01939 595 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 592 IPR045134 -
Trre12g01939 595 Coils Coil 572 592 - -
Trre12g01939 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 187 IPR013083 -
Trre12g01939 595 ProSiteProfiles YDG domain profile. 255 403 IPR003105 -
Trre12g01939 595 ProSitePatterns Zinc finger RING-type signature. 516 525 IPR017907 -
Trre12g01939 595 Gene3D - 226 419 IPR036987 -
Trre12g01939 595 ProSiteProfiles Zinc finger RING-type profile. 122 161 IPR001841 -
Trre12g01939 595 SMART ring_2 122 160 IPR001841 -
Trre12g01939 595 SMART ring_2 501 558 IPR001841 -
Trre12g01939 595 SUPERFAMILY RING/U-box 115 166 - -
Trre12g01939 595 SUPERFAMILY PUA domain-like 229 423 IPR015947 -
Trre12g01939 595 SUPERFAMILY FYVE/PHD zinc finger 5 58 IPR011011 -
Trre12g01939 595 CDD RING-HC_ORTHRUS_rpt1 120 165 IPR047498 -
Trre12g01939 595 Pfam SAD/SRA domain 258 406 IPR003105 -
Trre12g01939 595 Pfam RING-type zinc-finger 501 556 IPR027370 -
Trre12g01939 595 ProSitePatterns Zinc finger PHD-type signature. 12 54 IPR019786 -
Trre12g01939 595 SUPERFAMILY RING/U-box 480 560 - -
Trre12g01939 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 595 IPR013083 -
Trre12g01939 595 SMART G9a_1 250 407 IPR003105 -
Trre12g01939 595 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 226 421 - -
Trre12g01939 595 ProSiteProfiles Zinc finger RING-type profile. 501 559 IPR001841 -
Trre12g01939 595 Pfam Zinc finger, C3HC4 type (RING finger) 120 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01939 Trre-Chr12 20047890 20053384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01939 2 592 C2H2 Transcription Factor Family AT5G39550 57.214 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01939 K10638 - gmx:100781044 824.698