Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01934 ATGCCTGATTATCCAGAGATGAATCACAATATATCAGAAGAACATTCTGAGACAAAACACAATGTTCATAGTTATCAGAAGAATCATAATATATCAGAAGAATCTCATGAGACAAATCATTCTGAGACGAAACACAGTGTTCATAGCTATCCAAGTTCAGGAAACAATTCGCCAACGTATACCAAAAAGGCGAATCAAGAAGGAAAAGGTGCATTCACAAATGAATATTCAGCAAGTGAAGCTACTAAAGATACGGATCAAGTTTCTAAAACCAATGAAAAATTTGCTAATAAAACTAGACCACAGAAACTAAGTCCACCAACCAAAAACATTTCTGATGCTTTTACAAGACAAAGTCCAAGGACAAGGATGCCTGCAAATGCTGATCCTGCAAATCAAGGAATTTCAAAGGGTATGCCTACTCATCATACAAAGAACAACAGTCAAGGTGGACCTGGAAGTGGAACTAGCTCGCGCAGCGATAGTTTAGAGAGCACAAGTTGTTCTTCAAACATTAGGCCACATACTGGTGGTGATGTAAGGTGGGATGCAATTAACATGGCTTTGAAAAATGGTCCTCTTAATCTTAGCCATTTTCGGCTTCTTAAGCGTATCGGTTATGGAGACATTGGAAGTGTGTATCTTGTTGAACTTAAAGGAACTGATGCTCATTTTGCTATGAAAGTAATGGACAAGGCTGCTCTTATAAGTAGAAACAAACTTCTTAGATCACAAACTGAAAGGGAGATTCTTGGTCTTCTTGATCACCCATTTTTGCCTACTTTATATTCTTACTTTGAAACTGATAAGTTTTACTGTCTCGTTATGGAGTACTGTAGTGGCGGTGATCTTCATTCGCTTCGACAGAAACAGCCAAATAAGTGTTTCACTGAAGAAGCTGCAAGGTTCTATGCTTCAGAGGTTTTGTTAGCTCTTGAGTACCTACACATGCTTGGCATTGTATACAGAGACTTAAAGCCAGAGAATCTTTTAGTTAGAGATGAAGGTCACATCATGCTCTCAGATTTCGATTTATCGCTTCGCTGCTCTGTCTGTCCTACACTTGTCAAGTCTTCATCTACACACGCAGCAAGCGGCAGCGGCAGTGATTATGGAAGCATATTGAATGATGACCAAGCAGCTGCACAGCCATCAACAGGCTTCTTCCCTCGAATTTTGCCTTCGAAAAAGAATCGGAAGGCAAAATCAGACTTCGGCCTATTAGTTAACGGAAACCGCCTTCCCGAACTAATGGCAGAACCAACCAATGTGAGATCAATGTCTTTTGTAGGTACACATGAATATCTTGCACCTGAAATCATCAAAGGAGAAGGACATGGCAGTGCAGTAGATTGGTGGACATTCGGAATCTTCTTGTATGAATTGTTACACGGCGCAACGCCTTTTAAAGGCGCGGGATACAAAGCAACACTTTTCAATGTTGTTGGACAACCATTAAGGTTTCCAGATAGTCCTCAAATTAGTCCTGTGGCTAAAGATCTTATTAGAGGATTGTTGGTGAAGGAACCTCAGAAGAGAATTGCATACAAAAGAGGAGCAACAGAAATAAAACAGCATCCATTTTTTGAAGGAGTGAATTGGGCACTAGTTAGAAGTGCAACACCACCACATATACCAGATATGATAGACTTTTCAAAGTATGCTAAAAAAGAAACAGCACCACCACCAGTTGATAAGAAGATGCCAGAAATTGCTAGTGATAAAAAATGCAAAAATTCAACTGATAATTCTTATGTAGATTTTGAGTATTTTTAG 1776 0.3936 MPDYPEMNHNISEEHSETKHNVHSYQKNHNISEESHETNHSETKHSVHSYPSSGNNSPTYTKKANQEGKGAFTNEYSASEATKDTDQVSKTNEKFANKTRPQKLSPPTKNISDAFTRQSPRTRMPANADPANQGISKGMPTHHTKNNSQGGPGSGTSSRSDSLESTSCSSNIRPHTGGDVRWDAINMALKNGPLNLSHFRLLKRIGYGDIGSVYLVELKGTDAHFAMKVMDKAALISRNKLLRSQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEYCSGGDLHSLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVCPTLVKSSSTHAASGSGSDYGSILNDDQAAAQPSTGFFPRILPSKKNRKAKSDFGLLVNGNRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGATPFKGAGYKATLFNVVGQPLRFPDSPQISPVAKDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSATPPHIPDMIDFSKYAKKETAPPPVDKKMPEIASDKKCKNSTDNSYVDFEYF 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01934 591 MobiDBLite consensus disorder prediction 45 85 - -
Trre12g01934 591 FunFam serine/threonine-protein kinase D6PK-like 283 350 - -
Trre12g01934 591 PANTHER FLIPPASE KINASE 1-RELATED 26 557 - -
Trre12g01934 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Trre12g01934 591 CDD STKc_phototropin_like 197 550 - -
Trre12g01934 591 SUPERFAMILY Protein kinase-like (PK-like) 188 549 IPR011009 -
Trre12g01934 591 Gene3D Transferase(Phosphotransferase) domain 1 283 350 - -
Trre12g01934 591 Gene3D Transferase(Phosphotransferase) domain 1 404 547 - -
Trre12g01934 591 MobiDBLite consensus disorder prediction 560 579 - -
Trre12g01934 591 Pfam Protein kinase domain 403 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01934 591 Pfam Protein kinase domain 200 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01934 591 SMART serkin_6 199 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01934 591 FunFam Serine/threonine-protein kinase AGC1-5 197 282 - -
Trre12g01934 591 ProSiteProfiles Protein kinase domain profile. 199 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01934 591 MobiDBLite consensus disorder prediction 137 174 - -
Trre12g01934 591 MobiDBLite consensus disorder prediction 1 175 - -
Trre12g01934 591 FunFam Serine/threonine-protein kinase AGC1-7 422 547 - -
Trre12g01934 591 Gene3D Phosphorylase Kinase; domain 1 197 282 - -
Trre12g01934 591 MobiDBLite consensus disorder prediction 98 126 - -
Trre12g01934 591 MobiDBLite consensus disorder prediction 8 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01934 Trre-Chr12 19997233 19999928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01934 163 591 AGC Kinase Gene Family AT1G79250 72.606 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre12g01934 Pkinase 2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01934 - - tpra:123893855 1115.91