Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01929 ATGGAGTTTCAGGTTCAAATGTTCACTGCATCTGGTTTAGGTGCAAATGAACCTACACAATTTTCTCCATATGTTGCCAACATTCTTTATATTGACTCTCCTACTGGAGTTGGATTTTCATATTCAAAGAATTCATCTGACATTCTCAACAATGGTGATAAGAGGACAGCCGAGGACAATCTCATATTTCTACAGAAGTGGTTTGAGCGTTTTCCCCAGTATAAAGAAACCGACTTTTTCATCAGTGGTGAAAGCTATGCAGGACATTATGTTCCCCAACTTAGCCAAGTTATTGTCAAGCACAACTCAGCTACAAAACAAAATTCTATAAATCTGAAAGGTTACATGGTAGGAAATGCTCTAACAGATGATTTCAATGATCAATTGGGGATTTTCCAGTTTATGTGGTCAAGTGGTATGATTTCGGATCAAACATTCAAGCTCTTGAACCTACTATGTGATTTACAGTCAGTCGAACACCCGTCAAAATCATGTGAAAAAATCTTGGAAATTGCTGATAATGAATTGGGTAATATAGATCCATACAGTGTCTTTACCCCTCCTTGCCATGGTAGTGCTAATCAGCGGGTTAAAAGAACGCATAGTGTTGGAAGACTCAGAAGTGTGTATGATCCCTGCACCGAGAAGCACAGCACTATATACTTCAATCGACCTGAGGTCCAAAGGATTTTACATGTTGATCCAGATCATAAGCCTGCTAAATGGGAGACCTGCAATGATGTGGTAGCTATTAACTGGAAGGATTCTCCTAGAACTGTTCTCGATATATATCGTGAACTTATTCCTACTGGACTGCGAATATGGATTTTCAGTGGTAATACAGATGCTGTAATCCCGGTAACATCTACTCGCTATACCATAGCCGCTCTTAAGCTTCCAACTGTGAGCCCCTGGCGTGCATGGTATGATGACGGAGAGGTAGGAGGTTGGACTCAAGAATATGACGGACTTACGTTTGTAAACGTAAGGGGTGCAGGGCACGAAGTTCCTTTGCATAGACCAAAACTTGCTCTAACATTGTTCAAAGCTTTCTTAGCAGGAACCTCCATGCCAACTCTTGAACCACTCTCACTCACCGCTGCCTATTGA 1110 0.4126 MEFQVQMFTASGLGANEPTQFSPYVANILYIDSPTGVGFSYSKNSSDILNNGDKRTAEDNLIFLQKWFERFPQYKETDFFISGESYAGHYVPQLSQVIVKHNSATKQNSINLKGYMVGNALTDDFNDQLGIFQFMWSSGMISDQTFKLLNLLCDLQSVEHPSKSCEKILEIADNELGNIDPYSVFTPPCHGSANQRVKRTHSVGRLRSVYDPCTEKHSTIYFNRPEVQRILHVDPDHKPAKWETCNDVVAINWKDSPRTVLDIYRELIPTGLRIWIFSGNTDAVIPVTSTRYTIAALKLPTVSPWRAWYDDGEVGGWTQEYDGLTFVNVRGAGHEVPLHRPKLALTLFKAFLAGTSMPTLEPLSLTAAY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01929 369 PRINTS Carboxypeptidase C serine protease (S10) family signature 324 337 IPR001563 GO:0004185|GO:0006508
Trre12g01929 369 PRINTS Carboxypeptidase C serine protease (S10) family signature 67 92 IPR001563 GO:0004185|GO:0006508
Trre12g01929 369 PRINTS Carboxypeptidase C serine protease (S10) family signature 31 41 IPR001563 GO:0004185|GO:0006508
Trre12g01929 369 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 22 341 IPR001563 GO:0004185|GO:0006508
Trre12g01929 369 ProSitePatterns Serine carboxypeptidases, histidine active site. 324 341 IPR033124 GO:0004185
Trre12g01929 369 FunFam Carboxypeptidase 260 354 - -
Trre12g01929 369 Gene3D - 213 250 - -
Trre12g01929 369 SUPERFAMILY alpha/beta-Hydrolases 25 357 IPR029058 -
Trre12g01929 369 Gene3D - 260 354 - -
Trre12g01929 369 Gene3D alpha/beta hydrolase 15 191 IPR029058 -
Trre12g01929 369 ProSitePatterns Serine carboxypeptidases, serine active site. 81 88 IPR018202 GO:0004185
Trre12g01929 369 Pfam Serine carboxypeptidase 25 353 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01929 Trre-Chr12 19926838 19934909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01929 240 357 Calmodulin-binding Proteins AT2G22960 25.210 4.46e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01929 K16297 - gmx:100805227 567