Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01925 ATGCAATCTTTGGTTTCTGCAAAGTTTCTTTTGCTTGTTGGAGAATCATTCCCTATGAGAAGGGCTTTGTTCAATTCTAGGTTTGCTTGGTTTCATAGTAGTGTTCAATGTATGAGTCAGAGCCATCGTGATTCTCTTACCCTTTCAAGTATTGGTGTTAAAAGTGAAAAAATTGAAATTGAACCTAAGATTACAAGTAAATCAAATAAGGTTAAGCCATTAGGTTTAGCTTCTTCTGATGTTTTGAAGAGTAAAAGAAAACCCTTTGGAATTGGTGAGAAGAAAAGTGTTAGGGTTAAAGAGAAACAGAAAATAGATAATGCACCATTTGCTGCTAAGTCGTTTTCGGAACTTGGTATTCCGGATGTGTTGATTGAGAGGCTAGAAAAAGAGGGTTTCAATGTTCCAACTGATGTTCAGTCTGCTGCTGTTCCTACCATTTTGAAGAACCATGATGTTATAATTCAGTCGTATACGGGTTCGGGGAAAACATTGGCTTATCTCCTTCCTATATTGTCTGTTATTGGGCCGTTGAGTGGCGAAAATCGTGAAGCTGATGTTGATGGTGGTGAGACTGGGAAGAAATTGGGAGTAGAAGCGGTGATCGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATTGTGAGAGAGTTTGAGAAGATATTGGGAGTGGATAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACAAGGCAGGAAGAAGCTCTCAAGAAAAACAAACCTGCCATTGTTGTTGGTACGCCTGGTAGGATAGCCGAGCTAAGTGCAAGTGGGAAGCTTCGCACACACGGCTGTCAATATTTGGTATTAGATGAAGTTGATGAGCTGCTGTCATTCAATTTTCGTGAAGACATGCACAGATTATTGGAGCATGTTGGGAGGAGATCGGGTGGAGACCTAAAATCAAATGCTAAAAAGGCCGAGCGTCAGTTAATTATGGTTTCTGCAACTGTGCCGTTTTCTGTTGTTAGGGCAGCTAAAAGCTGGGGTAGTGATCCACTTCTTGTTCAAGCTAAGAAAATTGTACCGCTTGAAACCTTGTCTCCTGAGCCGGTCAATTTGTCACCAAACTCGAGTCCAAACTCCTCTGTACCATCTAAGGCTGTGGTAGAGAGTCTACCTCCAGCATTGAAACACTATTACTGTGTTGTGAGATTGCAGCACAAAGTTGATACATTGAGAAGGTGTATTCATGCATTGGATGCAAAATTTGTGATAGTTTTCATGAATCATACCAAGCAGCTAAAGGATGTTGTCTTCAAACTCGAGGCTCGTGGCGTGAAAGCCGCAGAGTTACACGGTGATCTTGGGAAGCTCGGTAGGTCGACAACTCTGAAGAAGTTCAAGAATGGTGAGGTTAGAGTTCTTGTGACAAATGAATTATCAGCAAGAGGTTTAGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCGACTGATTCAATTCACTATGCACACCGAGCTGGTCGAACTGGCCGGCTTGGTAGAAATGGCACAGTGCTAACCATATGTGAAGAGGCAGAGGTTTTTGTTGTGAGAAAATTGCAGAAGCAACTTGAAATACCGATAGCATGCTGTGATTTTGTCGAGGGAAAGCTTCTTGTCACCGAAGAAGAGACTACTCTAAGCAGTGCTTCTTGA 1674 0.4247 MQSLVSAKFLLLVGESFPMRRALFNSRFAWFHSSVQCMSQSHRDSLTLSSIGVKSEKIEIEPKITSKSNKVKPLGLASSDVLKSKRKPFGIGEKKSVRVKEKQKIDNAPFAAKSFSELGIPDVLIERLEKEGFNVPTDVQSAAVPTILKNHDVIIQSYTGSGKTLAYLLPILSVIGPLSGENREADVDGGETGKKLGVEAVIVAPSRELGMQIVREFEKILGVDNKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCQYLVLDEVDELLSFNFREDMHRLLEHVGRRSGGDLKSNAKKAERQLIMVSATVPFSVVRAAKSWGSDPLLVQAKKIVPLETLSPEPVNLSPNSSPNSSVPSKAVVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIVFMNHTKQLKDVVFKLEARGVKAAELHGDLGKLGRSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEEAEVFVVRKLQKQLEIPIACCDFVEGKLLVTEEETTLSSAS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01925 557 Pfam Helicase conserved C-terminal domain 401 506 IPR001650 -
Trre12g01925 557 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Trre12g01925 557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 345 IPR014001 -
Trre12g01925 557 SMART ultradead3 132 364 IPR014001 -
Trre12g01925 557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 545 IPR001650 -
Trre12g01925 557 Pfam DEAD/DEAH box helicase 137 331 IPR011545 GO:0003676|GO:0005524
Trre12g01925 557 CDD DEADc 124 346 - -
Trre12g01925 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 526 IPR027417 -
Trre12g01925 557 Gene3D - 83 347 IPR027417 -
Trre12g01925 557 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 58 544 - -
Trre12g01925 557 SMART helicmild6 425 506 IPR001650 -
Trre12g01925 557 Gene3D - 383 539 IPR027417 -
Trre12g01925 557 CDD SF2_C_DEAD 386 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01925 Trre-Chr12 19883065 19884738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01925 114 540 Eukaryotic Initiation Factors Gene Family AT3G19760 25.404 7.61e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01925 - - gmx:100812968 842.417