Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01910 ATGTCTAACAAATCAGAAAATGCACAAGGGTCTTATTCTAAGAGGTTTGTGAGTTCTAGTTGGTTGCATTCAGTTGCTAATAGAAAGAGTCTTAGTTCTACATCTTTGAACCAAGGAAAATTTGAGAGGATGGAACCATCTGACACAGTGAGAAGTGTTGATTTGGATGTTGTTTCGGATTCAGATAGGCGTGATTCGGGTTATCGTGCAACTGCTTCTAGGGATCCTAAAGTGGAGGAAGAAGAGTATCAATTACAACTGGCTTTGGAGATGAGTGCAAAGGAGGATCCTGAAGCTGTGCAGATTGAGGCTGTTAAGGAAATTAGTTTAGGGTCTTGTGCTCCTAATGATACACCAGCTGAAATTTTGGCATACAGATACTGGAATTACAATGCTCTTGGTTATGACGACAAAGTCATGGATGGATTCTATGATCTATATGGGATCTTAACTGAGTCAAACACTGCAACGATGCCTTCCCTTATAGATCTGCAAGGAAGATCAATCTCAGGTAATGTCACATGGGAAGCTGTATTAGTCAATAGGGCTGCTGATTCTAATTTGTTGAAACTTGAGCAGAAAGCCCTCGAGCTTACCGTCAAATCGAGAAGTGATTCTGAAGTTGTTAAAGATATCGATTTGGTTCGCAAGCTTGCATTATTTGTGGCTGATTATATGGGTGGACCTGTTGGAAATCCTGAAAGCATGTCAAAAGCATGGAGAAGTCTTAGTTACAGTCTGCAATCAACTCTTGGTAGCATGATTTTGCCACTCGGTTCTTTGACTATTGGATTAGCTCGGCATCGAGCATTGTTATTTAAGGTTCTAGCTGATAGTTTGAGCATTCCATCACGGTTGGTGAAAGGAAAGCAATATACAGGTTCTGATGATGCAGCAATTAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGATCTAATGGCAGATCCCGGAACTCTTATTCCATCGGATGCTACTGGATCATGTATTGAGTACGATGAATCATTTTTTGCGGCAAGTTCTTCATCAAGAGACCTCGATTCATCTCGTGTAGCATCATATAGCAGTGGAGTTGGAAGTTCATCGGAAGAAACTTCAGATTTTGGGATGTCAAACATAGAAAACAGATCAAAACAACATAATGTCAAGAAGATCGTAGAGCAGGAAGCTCAAGGAAGACCTAATCATCGATATGTTCATGCAAGATCATCTTCTTGGAGTGAAGGGATTAGTTCCTCCGTAGCAATCAGAATGAAAGCCAAAAAGGTTTCTCAATTTATGATTGATACTGCCAAGGAAAACCCTCACTTAGCTCAGAAGCTTCATGATGTTTTACTTGAAAGTGGTGTTGTTCCTCCGCCAAATTTATTTTCTGACAATTATCACGAGGAATTTGTTTCCTCAACTGAAGAGAAAAATGTACAAAAACAAGGAAGTGAACATCAAGAAGTGGAATTTGATGATAATCTCGGTCCTTCTATGCCTGTAGAAGGTTTAGGAACTAACCTTCCTCTTCACACTCAGGTAAAATATGGGAGAAAGGTGCCAGTTTCTGCAGCAGCAGCTGCAGCGGCTGCGGTTGTTGCATCTTCTATGGTAGTTGCTGCAGTGAGGTCAAACACTGATTCCAACATCGAGCTTTCAGTCTCGGCTGCTGCTGCCGCTACCGCTGCAGCTGTAGTAGCAACCACTTCTGCAGTGAGTATGTATGAACATAGCAGTCGAAGTGATGGGGATACCGAAAGTTCTGGAACAAATTTTGAAGTCGAGAGAAGATCTGGTAGCTCAGTTGTAAGTAATGACAGTATAAAATCTGATTGTTCTTCTCTAGACGATGTTGCTGAGCATGAAATACATTGGGAGGAAATCACACTTGGGGAACGTATTGGACTCGGATCTTATGGGGAGGTGTATCGTGGTGAATGGCGAGGAACTGAAGTTGCTGTAAAGAGATTTCTAAATCAAGATATATCCGGTGAAGCACTTGAAGAATTCATAAGTGAGGTCAGAATAATGAAAAGGTTGAGGCATCCAAATGTGGTTCTCTTCATGGGAGCAGTAATTCGATTTCCAAATCTTTCAATTGTTACTGAATTTCTTCCGAGAGGAAGTTTGTATAGATTAATTCATCGGCCGAACAATCAATTAGACGAGCGAAGGCTTTTGAGAATGGCCCTTGATACTGCTCGAGGAATGAACTATTTGCACAACTGCAGTCCGGTGATAGTGCATCGGGATTTGAAGTCTCCAAATCTTCTTGTTGATAAAAATTGGGTTGTAAAGGTATGTGATTTTGGCTTATCGCGTATGAAGCATAGCACATTCCTTTCTTCAAGATCAACTGCAGGAACGGCCGAGTGGATGGCTCCCGAAATGTTGAGAAATGAACCGTCAAATGAAAAGTGTGATGTTTATAGCTTTGGGATCATATTATGGGAGCTGTTTACTTTGCAGCAACCTTGGAGAGGAATGAATTCAATGCAAGTTGTCGGTGCAGTGGGTTTTCAACATCGCCGTCTTGACATTCCTGATGACATGAGTCCTGCCATTGCAGATATTGTCAGGAGATGCTGGCAGACAGATTCAAAGTTGAGACCTACATTTGCTGAAATATTGGCAGCTCTAAAGCCGTTACAGAAACCAATTGTCGGTTCTCAAGTGCCTCGACCAGTTGCGTCAGGTAGGCACGGGAAGGTTCAATCATCAGCTGCAGAAAGATAG 2727 0.4169 MSNKSENAQGSYSKRFVSSSWLHSVANRKSLSSTSLNQGKFERMEPSDTVRSVDLDVVSDSDRRDSGYRATASRDPKVEEEEYQLQLALEMSAKEDPEAVQIEAVKEISLGSCAPNDTPAEILAYRYWNYNALGYDDKVMDGFYDLYGILTESNTATMPSLIDLQGRSISGNVTWEAVLVNRAADSNLLKLEQKALELTVKSRSDSEVVKDIDLVRKLALFVADYMGGPVGNPESMSKAWRSLSYSLQSTLGSMILPLGSLTIGLARHRALLFKVLADSLSIPSRLVKGKQYTGSDDAAINFVKIDDGREYIVDLMADPGTLIPSDATGSCIEYDESFFAASSSSRDLDSSRVASYSSGVGSSSEETSDFGMSNIENRSKQHNVKKIVEQEAQGRPNHRYVHARSSSWSEGISSSVAIRMKAKKVSQFMIDTAKENPHLAQKLHDVLLESGVVPPPNLFSDNYHEEFVSSTEEKNVQKQGSEHQEVEFDDNLGPSMPVEGLGTNLPLHTQVKYGRKVPVSAAAAAAAAVVASSMVVAAVRSNTDSNIELSVSAAAAATAAAVVATTSAVSMYEHSSRSDGDTESSGTNFEVERRSGSSVVSNDSIKSDCSSLDDVAEHEIHWEEITLGERIGLGSYGEVYRGEWRGTEVAVKRFLNQDISGEALEEFISEVRIMKRLRHPNVVLFMGAVIRFPNLSIVTEFLPRGSLYRLIHRPNNQLDERRLLRMALDTARGMNYLHNCSPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEMLRNEPSNEKCDVYSFGIILWELFTLQQPWRGMNSMQVVGAVGFQHRRLDIPDDMSPAIADIVRRCWQTDSKLRPTFAEILAALKPLQKPIVGSQVPRPVASGRHGKVQSSAAER 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01910 908 FunFam PAS domain-containing protein tyrosine kinase family protein 703 890 - -
Trre12g01910 908 Pfam Ethylene-responsive protein kinase Le-CTR1 120 323 - -
Trre12g01910 908 ProSitePatterns Protein kinases ATP-binding region signature. 631 652 IPR017441 GO:0005524
Trre12g01910 908 Gene3D Phosphorylase Kinase; domain 1 618 702 - -
Trre12g01910 908 SMART serkin_6 625 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01910 908 CDD STKc_MAP3K-like 631 877 - -
Trre12g01910 908 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 80 99 IPR003903 -
Trre12g01910 908 PRINTS Tyrosine kinase catalytic domain signature 785 795 IPR001245 GO:0004672|GO:0006468
Trre12g01910 908 PRINTS Tyrosine kinase catalytic domain signature 699 712 IPR001245 GO:0004672|GO:0006468
Trre12g01910 908 PRINTS Tyrosine kinase catalytic domain signature 804 826 IPR001245 GO:0004672|GO:0006468
Trre12g01910 908 PRINTS Tyrosine kinase catalytic domain signature 848 870 IPR001245 GO:0004672|GO:0006468
Trre12g01910 908 PRINTS Tyrosine kinase catalytic domain signature 738 756 IPR001245 GO:0004672|GO:0006468
Trre12g01910 908 FunFam Serine/threonine-protein kinase isoform 1 616 703 - -
Trre12g01910 908 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 187 882 - -
Trre12g01910 908 ProSiteProfiles Protein kinase domain profile. 625 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01910 908 Pfam Protein tyrosine and serine/threonine kinase 625 876 IPR001245 GO:0004672|GO:0006468
Trre12g01910 908 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672|GO:0006468
Trre12g01910 908 SUPERFAMILY Protein kinase-like (PK-like) 602 876 IPR011009 -
Trre12g01910 908 MobiDBLite consensus disorder prediction 888 908 - -
Trre12g01910 908 MobiDBLite consensus disorder prediction 571 607 - -
Trre12g01910 908 Gene3D Transferase(Phosphotransferase) domain 1 704 886 - -
Trre12g01910 908 MobiDBLite consensus disorder prediction 44 79 - -
Trre12g01910 908 MobiDBLite consensus disorder prediction 31 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01910 Trre-Chr12 19713728 19722577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01910 19 895 MAP Kinase Kinase Kinase AT1G73660 60.379 0.0 1029
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre12g01910 PK_Tyr_Ser-Thr 4.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01910 - - psat:127107393 1379.39